FlyBase Aberration Report: Dmel\Df(3R)ED5066

General Information

Symbol

Df(3R)ED5066

Species

D. melanogaster

Name

FlyBase ID

FBab0036305

Feature type

chromosomal_deletion

Computed Breakpoints include

[82C5-82C5];[82E4-82E4];

Features within 82C5--82E4

Genomic Maps

JBrowse

Sequence coordinates

3R:4,649,885..4,649,885 (Df(3R)ED5066:bk1)

(DrosDel Project, 2007.6.25)

3R:4,952,682..4,952,682 (Df(3R)ED5066:bk2)

(DrosDel Project, 2007.6.25)

Member of large scale dataset(s)

Dfs_DrosDel_set1

A set of isogenic deficiency stocks created by FLP-induced recombination between FRT-carrying transgenic insertions; molecularly defined deletion endpoints correspond to initial location of the progenitor insertions. Initial core set of 209 isogenic deletions provides ~60% euchromatic genome coverage.

(Ryder et al., 2007)

Nature of Aberration

Cytological Order

Progenitor

P{RS3r}CB-5152-3

(Roote, 2004.7.20, Ryder, 2003.6.17)

P{RS5r}5-HA-1188

(Roote, 2004.7.20, Ryder, 2003.6.17)

Mutagen

FLPase

(Roote, 2004.7.20, Ryder, 2003.6.17)

Class of aberration (relative to wild type)

chromosomal_deletion

(FlyBase, 2007)

Class of aberration (relative to progenitor)

chromosomal_deletion

(Roote, 2004.7.20, Ryder, 2003.6.17)

Breakpoints

82C5;82E4

(FlyBase Curators, 2008)

Causes alleles

Carries alleles

Transposon Insertions

P{3'.RS5+3.3'}ED5066

(Roote, 2004.7.20, Ryder, 2003.6.17)

Formalized genetic data

Genetic mapping information

Comments

Comments on Cytology

Confirmed by lack of complementation to a known lethal mutation predicted to fall between the progenitor insertions.

(Ryder and Roote, 2005.11.4)

Limits computationally determined from location of progenitor P insertion on genome sequence between P{PZ}l(3)02733⁰²⁷³³ and P{EP}EP974

Sequence Crossreferences

DDBJ / EMBL / GenBank

DNA sequence

Protein sequence

Gene Deletion and Duplication Data

Genes Deleted / Disrupted

Complementation Data

Completely deleted / disrupted

Karyβ3

(Roote, 2004.7.20)

opa

(Roote, 2004.7.20)

Poc1

(Blachon et al., 2009)

Partially deleted / disrupted

Molecular Data

Completely deleted

Partially deleted

Genes NOT Deleted / Disrupted

Complementation Data

Molecular Data

Genes Duplicated

Complementation Data

Completely duplicated

Partially duplicated

Molecular Data

Completely duplicated

Partially duplicated

Genes NOT Duplicated

Complementation Data

Molecular Data

Affected Genes Inferred by Location (32)

Related Comments

Phenotypic Data

In combination with other aberrations

NOT in combination with other aberrations

Stocks (2)

Bloomington

8092

w¹¹¹⁸; Df(3R)ED5066, P{3'.RS5+3.3'}ED5066/TM6C, cu¹ Sb¹

Kyoto

150447

w¹¹¹⁸; Df(3R)ED5066 / TM6C, Sb¹

Notes on Origin

Discoverer

Balancer / Genotype Variants of the Aberration

Separable Components

Other Comments

Synonyms and Secondary IDs (2)

Reported As

Symbol Synonym

Df(3R)ED5066

(Hope et al., 2019, Jo et al., 2019, Beati et al., 2018, Wang and Baker, 2015, Popkova et al., 2012, Swaminathan et al., 2010, Blachon et al., 2009, FlyBase Curators, 2008)

Df_3R_ED5066

(Nelson et al., 2016)

Name Synonyms

Secondary FlyBase IDs

References (16)

Report Sections

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