FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Allele: Dmel\Pdxk1
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General Information
Symbol
Dmel\Pdxk1
Species
D. melanogaster
Name
FlyBase ID
FBal0295825
Feature type
allele
Associated gene
Associated Insertion(s)
Carried in Construct
Key Links
Genomic Maps

Nature of the Allele
Progenitor genotype
Cytology
Description

Pdxk1 carries an A to G transition at nucleotide 338 in a splice acceptor site, which is predicted to lead to a truncated protein of 83 amino acids.

Nucleotide substitution: A338G.

Mutations Mapped to the Genome
Curation Data
Type
Location
Additional Notes
References
Nucleotide change:

A9361007G

Comment:

A to G transition in the splice acceptor of the second intron leads to early translation termination after the addition of 16 novel amino acids.

Variant Molecular Consequences
Associated Sequence Data
DNA sequence
Protein sequence
 
Expression Data
Reporter Expression
Additional Information
Statement
Reference
 
Marker for
Reflects expression of
Reporter construct used in assay
Human Disease Associations
Disease Ontology (DO) Annotations
Models Based on Experimental Evidence ( 0 )
Disease
Evidence
References
Modifiers Based on Experimental Evidence ( 0 )
Disease
Interaction
References
Comments on Models/Modifiers Based on Experimental Evidence ( 0 )
 
Disease-implicated variant(s)
 
Phenotypic Data
Phenotypic Class
Phenotype Manifest In
Detailed Description
Statement
Reference

Pdxk1 homozygous third instar larvae exhibit chromosomal aberrations (such as autosomal chromatid deletion, isochromatid deletion and isochromatid deletion at the level of centromere) in neuroblasts when compared to controls.

Mitotic cells from colchicine-treated Pdxk1 mutant brains display ~6% chromosome aberrations (CABs), compared to ~0,5% in wild type cells. A significantly higher proportion of CABs is seen in Pdxk1/Df(3L)AC1 mutant cells.

Feeding Pdxk1 mutant larvae food that has been supplemented with Pyridoxal 5'-phosphate (PLP) in 4% sucrose suppresses the increased frequency of colchicine-induced chromosome aberrations (CABs) seen on standard food to wild type levels. Conversely, supplementing the food solely with 4% sucrose enhances the phenotypes; a 3-fold increase in CAB frequency is seen.

Dissecting the brains of Pdxk1 mutant third instar larvae and incubating them in medium supplemented with 1% glucose causes a substantial increase in the number of colchicine-induced chromosome aberrations (CABs) compared with controls incubated in saline. An even greater increase in CAB frequency is seen when larval brains are incubated in saline supplemented with 1% fructose. Neither sucrose or fructose increases CAB frequency in wild type flies. The effects of both sugars are completely suppressed when 1 mM Pyridoxal 5'-phosphate (PLP) is added to the medium.

In Pdxk1 colchicine-treated mutant brains exposed to high glucose concentrations, the frequency of cells with chromosome aberrations (CABs) increases with an increasing intracellular glucose concentration (IGC). Treatments of 1% and 5% glucose result in increased CABS in Pdxk1 mutants, but no increase in CABS is seen in wild type until treatment with 10% glucose. Pdxk1 mutant brain cells have significantly higher numbers of CABs than wild type cells with a comparable IGC, with mutant brains showing a higher frequency of metaphases with damaged chromosomes. In brains with high IGC approximately 10% of the metaphases with more than 5 CABs show an extensive chromosome fragmentation. Adding tyrosine to the incubation medium does not increase the frequency of CABs compared to incubation in glucose alone. A reduction in CAB frequency is also seen with α-lipoic acid (ALA), both in the presence or absence of glucose.

The loss of recognisable spindle structures seen in colchicine-treated wild type and Pdxk1 mutant brains is not seen in Pdxk1 mutant brains incubated in 1% glucose. Glucose-treated mutant cells contain several anaphases, and these cells display many mitotic spindles with a slightly reduced microtubule density but otherwise normal. The addition of 1mM Pyridoxal 5'-phosphate (PLP) or 1.7 mM tyrosine to the medium partially suppresses this phenotype but no change in suppression is seen with 1.7 mM glycine.

Pdxk1 mutant larvae exhibit lower dTTP and higher dUTP levels compared with wild type controls. Pyridoxal 5'-phosphate (PLP) level in Pdxk1 mutants is approximately 50% of that in wild type. However Pdxk1 mutant larval brains show weak sensitivity to hydroxyurea; a similar frequency of colchicine-induced chromosome aberrations is seen in hydroxyurea treated Pdxk1 mutants as in wild type and untreated Pdxk1 mutant controls.

Both untreated and glucose treated Pdxk1 mutant brains consistently exhibit higher frequencies of Advanced Glycation End products (AGEs) compared to controls. The addition of Pyridoxal 5'-phosphate (PLP) suppresses this effect. Addition of α-lipoic acid (ALA) also partially reduces the frequency of AGE positive cells.

The hemolymph of Pdxk1 mutant larvae contains nearly twice as much glucose as that of wild type larvae.

Mitotic cells from colchicine-treated Pdxk1/Pdxk2 mutant brains display ~6% chromosome aberrations (CABs), compared to ~0.5% in wild type cells.

External Data
Interactions
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Phenotypic Class
Suppressed by
Statement
Reference

Pdxk1 has lethal phenotype, suppressible by Hsap\PDXKTub.Tag:HA

Phenotype Manifest In
Additional Comments
Genetic Interactions
Statement
Reference

Expression of Hsap\PDXKTub.Tag:HA, Hsap\PDXKA234G.Tub.Tag:HA, Hsap\PDXKD87H.Tub.Tag:HA, Hsap\PDXKH246Q.Tub.Tag:HA or Hsap\PDXKV128I.Tub.Tag:HA in the Pdxk1 heterozygote background does not lead to any chromosomal aberrations in third instar larval neuroblasts when compared to controls.

Xenogenetic Interactions
Statement
Reference

Expression of Hsap\PDXKtub.T:Ivir\HA1 rescues the high frequency of chromosome aberrations compared to controls seen in Pdxk1 mutants when exposed to colchicine. The lethality is also rescued.

Complementation and Rescue Data
Rescued by
Comments

Expression of Pdxktub.T:Ivir\HA1 rescues the high frequency of chromosome aberrations compared to controls seen in Pdxk1 mutants when exposed to colchicine. The lethality is also rescued.

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Mutant
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Synonyms and Secondary IDs (2)
Reported As
Symbol Synonym
Name Synonyms
Secondary FlyBase IDs
    References (2)