FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Gene: Dmel\tRNA:Tyr-GTA-1-9
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General Information
Symbol
Dmel\tRNA:Tyr-GTA-1-9
Species
D. melanogaster
Name
transfer RNA:Tyrosine-GTA 1-9
Annotation Symbol
CR31905
Feature Type
tRNA_gene
FlyBase ID
FBgn0012018
Gene Model Status
Current
Stock Availability
None publicly available
Gene Summary
Contribute a Gene Snapshot for this gene.
All Summaries
Also Known As

transfer RNA:Tyrosine-GTA 3-1, tRNA:tyr1:28C , tRNA:Tyr-GTA-3-1

Key Links
Genomic Location
Cytogenetic map
28C1-28C1
Sequence location
Recombination map
2-28
RefSeq locus
NT_033779 REGION:7711476..7711661
Sequence
Get Decorated FASTA
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
NCBI
UCSC
Ensembl
PopFly
Function
Gene Ontology (GO) Annotations (4 terms)
Molecular Function (2 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (2 terms)
CV Term
Evidence
References
enables triplet codon-amino acid adaptor activity
inferred from electronic annotation with Rfam:RF00005
(RNAcentral, 2018-)
enables UAC codon-amino acid adaptor activity
inferred from sequence model
(Chan and Lowe, 2016)
Biological Process (1 term)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (1 term)
CV Term
Evidence
References
involved_in translation
inferred by curator from GO:0033410
(Chan and Lowe, 2016)
Cellular Component (1 term)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (1 term)
CV Term
Evidence
References
located_in cytosol
inferred by curator from GO:0033410
(Chan and Lowe, 2016)
Gene Group (FlyBase)
Protein Family (UniProt)
-
Protein Signatures (InterPro)
    -
    Summaries
    Gene Group (FlyBase)
    CYTOSOLIC TYROSINE-GTA TRANSFER RNAS -
    tRNAs with the GTA anticodon recognize the UAC codon, which codes for tyrosine. (Adapted from GO:0033410.)
    Gene Model and Products
    Number of Transcripts
    1
    Number of Unique Polypeptides
    0

    Please see the JBrowse view of Dmel\tRNA:Tyr-GTA-1-9 for information on other features

    To submit a correction to a gene model please use the Contact FlyBase form

    Protein Domains (via Pfam)
    Isoform displayed:
    Pfam protein domains
    InterPro name
    classification
    start
    end
    Protein Domains (via SMART)
    Isoform displayed:
    SMART protein domains
    InterPro name
    classification
    start
    end
    Structure
    RNA 2D structure (Predicted by RNAcentral) (RNAcentral entry URS00001D6C17)
    Experimentally Determined Structures
    Crossreferences
    Comments on Gene Model

    Identified as tRNA:Y1:28C based on FBrf0048663.

    Annotation of the tRNA intron is based on the data in FBrf0048664.

    Overlaps 5' UTR of protein-coding gene.

    Transcript Data
    Annotated Transcripts
    Name
    FlyBase ID
    RefSeq ID
    Length (nt)
    tRNA:Tyr-GTA-1-9-RA
    FBtr0089297
    73
    Additional Transcript Data and Comments
    Reported size (kB)
    Comments
    External Data
    Crossreferences
    Sequences Consistent with the Gene Model
    Nucleotide / Polypeptide Records
    Mapped Features

    Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\tRNA:Tyr-GTA-1-9 using the Feature Mapper tool.

    External Data
    Crossreferences
    Linkouts
    Expression Data
    Testis-specificity index

    The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

    NA

    Transcript Expression
    Additional Descriptive Data
    Marker for
     
    Subcellular Localization
    CV Term
    Polypeptide Expression
    Additional Descriptive Data
    Marker for
     
    Subcellular Localization
    CV Term
    Evidence
    References
    Expression Deduced from Reporters
    High-Throughput Expression Data
    Associated Tools

    JBrowse - Visual display of RNA-Seq signals

    View Dmel\tRNA:Tyr-GTA-1-9 in JBrowse
    Bulk Downloads
    RNA-Seq RPKM values for all genes
    Reference
    See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
    Developmental Proteome: Life Cycle
    Developmental Proteome: Embryogenesis
    External Data and Images
    Linkouts
    DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species
    EMBL-EBI Single Cell Expression Atlas - Single cell expression across species
    FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
    Images
    FlyBase Wiki
    Image Based Resources
    Alleles, Insertions, Transgenic Constructs, and Aberrations
    Classical and Insertion Alleles ( 0 )
    For All Classical and Insertion Alleles Show
     
    Other relevant insertions
    Transgenic Constructs ( 1 )
    For All Alleles Carried on Transgenic Constructs Show
    Transgenic constructs containing/affecting coding region of tRNA:Tyr-GTA-1-9
    Transgenic constructs containing regulatory region of tRNA:Tyr-GTA-1-9
    Aberrations (Deficiencies and Duplications) ( 0 )
    Inferred from experimentation ( 0 )
    Inferred from location ( 12 )
    Variants
    Variant Molecular Consequences
    Alleles Representing Disease-Implicated Variants
    Phenotypes
    For more details about a specific phenotype click on the relevant allele symbol.
    Phenotype manifest in
    Allele
    Orthologs
    Downloads
    Download All DIOPT Orthologs
    Human Orthologs (via DIOPT v9.1)
    Species\Gene Symbol
    Score
    Best Score
    Best Reverse Score
    Source
    Compara
    Domainoid
    eggNOG
    Hieranoid
    Homologene
    Inparanoid
    OMA
    OrthoDB
    OrthoFinder
    OrthoInspector
    orthoMCL
    Panther
    Phylome
    SonicParanoid
    Alignment
    Complementation?
    Transgene?
    Homo sapiens (Human) (0)
    Model Organism Orthologs (via DIOPT v9.1)
    Species\Gene Symbol
    Score
    Best Score
    Best Reverse Score
    Source
    Compara
    Domainoid
    eggNOG
    Hieranoid
    Homologene
    Inparanoid
    OMA
    OrthoDB
    OrthoFinder
    OrthoInspector
    orthoMCL
    Panther
    Phylome
    SonicParanoid
    Alignment
    Complementation?
    Transgene?
    Rattus norvegicus (Norway rat) (0)
    Mus musculus (laboratory mouse) (0)
    Xenopus tropicalis (Western clawed frog) (0)
    Danio rerio (Zebrafish) (0)
    Caenorhabditis elegans (Nematode, roundworm) (0)
    Anopheles gambiae (African malaria mosquito) (0)
    Arabidopsis thaliana (thale-cress) (0)
    Saccharomyces cerevisiae (Brewer's yeast) (0)
    Schizosaccharomyces pombe (Fission yeast) (0)
    Escherichia coli (enterobacterium) (0)
    Other Organism Orthologs (via OrthoDB)
    Data provided directly from OrthoDB:tRNA:Tyr-GTA-1-9. Refer to their site for version information.
    Paralogs
    Human Disease Associations
    FlyBase Human Disease Model Reports
      Disease Ontology (DO) Annotations
      Models Based on Experimental Evidence ( 0 )
      Allele
      Disease
      Evidence
      References
      Potential Models Based on Orthology ( 0 )
      Human Ortholog
      Disease
      Evidence
      References
      Modifiers Based on Experimental Evidence ( 0 )
      Allele
      Disease
      Interaction
      References
      Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)
      Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
      Homo sapiens (Human)
      Gene name
      Score
      OMIM
      OMIM Phenotype
      DO term
      Complementation?
      Transgene?
      Functional Complementation Data
      Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
      Interactions
      Summary of Physical Interactions
      Interaction Browsers
      Summary of Genetic Interactions
      Interaction Browsers
      Starting gene(s)
      Interaction type
      Interacting gene(s)
      Reference
      Starting gene(s)
      Interaction type
      Interacting gene(s)
      Reference
      External Data
      Linkouts
      Pathways
      Signaling Pathways (FlyBase)
      Metabolic Pathways
      FlyBase
      External Links
      FlyCyc Pathways - Pathways from a BioCyc PGDB for Dmel
      External Data
      Linkouts
      Class of Gene
      Genomic Location and Detailed Mapping Data
      Chromosome (arm)
      2L
      Recombination map
      2-28
      Cytogenetic map
      28C1-28C1
      Sequence location
      FlyBase Computed Cytological Location
      Cytogenetic map
      Evidence for location
      28C1-28C1
      Limits computationally determined from genome sequence between P{EP}EP2419EP2419&P{EP}EP575 and P{PZ}l(2)rL220rL220
      Experimentally Determined Cytological Location
      Cytogenetic map
      Notes
      References
      28C-28C
      (determined by in situ hybridisation)
      (Suter and Kubli, 1988, Hayashi et al., 1982)
      Experimentally Determined Recombination Data
      Location

      2-28

      (FlyBase, 2016)

      2-25.0

      (Comeron et al., 2012)
      Left of (cM)
      Right of (cM)
      Notes
      Stocks and Reagents
      Stocks (0)
      Genomic Clones (13)
       

      Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

      cDNA Clones (0)
       

      Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

      cDNA clones, fully sequenced
      BDGP DGC clones
        Other clones
          Drosophila Genomics Resource Center cDNA clones

          For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

            cDNA Clones, End Sequenced (ESTs)
            BDGP DGC clones
              Other clones
                RNAi and Array Information
                Linkouts
                Antibody Information
                Laboratory Generated Antibodies
                 
                Commercially Available Antibodies
                 
                Cell Line Information
                Publicly Available Cell Lines
                 
                  Other Stable Cell Lines
                   
                    Other Comments

                    Labelled as 'Undetermined isotype' in current GtRNAdb (Jan 2016), but Tyr-GTA isotype has been confirmed manually. This geme has an unusually long intron (113bp) that causes its mis-identification by tRNAscan-SE.

                    (Marygold and Lowe, 2016.1.20)

                    New annotation (CR31905) in release 3 of the genome annotation.

                    (FlyBase Genome Annotators, 2002-2003)

                    tRNA gene: amino acid=Tyr, anticodon=GTA.

                    (FlyBase, 1996-)

                    Promoter analysis of Mp suggests that the tRNA:Y1:28C coding region, that is located 300bp 5' from the Mp transcription start site, and/or the tRNA:Y1:28C leader sequences and the first 129 amino acids of the Mp coding region are required for the correct expression of Mp.

                    (Kubli et al., 1991)
                    Relationship to Other Genes
                    Source for database merge of

                    Source for merge of: tRNA:Y1:28C CR31905

                    (FlyBase, 1996-)
                    Additional comments
                    Nomenclature History
                    Source for database identify of

                    Source for identity of: tRNA:Tyr-GTA-3-1 tRNA:Y1:28C

                    (Marygold and Lowe, 2016.1.20)

                    Source for identity of: tRNA:Tyr-GTA-1-9 tRNA:Tyr-GTA-3-1

                    (Marygold and Chan, 2019.1.10)
                    Nomenclature comments
                    Etymology
                    Synonyms and Secondary IDs (16)
                    Reported As
                    Symbol Synonym
                    CR31905
                    (Schmidt et al., 2019, Lu et al., 2015)
                    Tyr-tRNA
                    (Suter, 1989.6.15)
                    tRNA-Tyr
                    (Choffat, 1994.5.2)
                    tRNA-Und-NNN-1-1
                    (Lowe and Chan, 2016)
                    tRNA:Tyr-GTA-1-9
                    (Marygold et al., 2022, Marygold and Chan, 2019.1.10)
                    tRNA:Tyr-GTA-3-1
                    (Marygold and Lowe, 2016.1.20)
                    tRNA:TyrGUA
                    (Schmidt et al., 2019)
                    tRNA:TyrGUA
                    (Lu et al., 2015)
                    tRNA:Y
                    tRNA:Y1:28C
                    tRNA:tyr1:28C
                    (Kubli et al., 1991)
                    tRNATyr
                    (Mukai et al., 2010)
                    tRNATyr1γ
                    (Hayashi et al., 1982)
                    Name Synonyms
                    transfer RNA:Tyrosine-GTA 1-9
                    transfer RNA:Tyrosine-GTA 3-1
                    (Marygold and Lowe, 2016.1.20)
                    transfer RNA:tyr1:28C
                    Secondary FlyBase IDs
                    • FBgn0012014
                    • FBgn0051905
                    Datasets (0)
                    Study focus (0)
                    Experimental Role
                    Project
                    Project Type
                    Title
                    Study result (0)
                    Result
                    Result Type
                    Title
                    External Crossreferences and Linkouts ( 14 )
                    Sequence Crossreferences
                    NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
                    GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
                    RNAcentral - A comprehensive ncRNA sequence collection representing all ncRNA types from a broad range of organisms
                    Other crossreferences
                    DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species
                    EMBL-EBI Single Cell Expression Atlas - Single cell expression across species
                    FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
                    FlyMine - An integrated database for Drosophila genomics
                    KEGG Genes - Molecular building blocks of life in the genomic space.
                    MARRVEL_MODEL - MARRVEL (model organism gene)
                    Linkouts
                    FlyCyc Genes - Genes from a BioCyc PGDB for Dmel
                    FlyCyc Pathways - Pathways from a BioCyc PGDB for Dmel
                    GtRNAdb - Genomic tRNA Database: tRNA gene predictions from tRNAscan-SE analysis of complete genomes
                    References (21)