FB2026_02 , released June 18, 2026
Human Disease Model Report: neuronal ceroid lipofuscinosis 3
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General Information
Name
neuronal ceroid lipofuscinosis 3
FlyBase ID
FBhh0000106
Overview

This report describes neuronal ceroid lipofuscinosis 3 (NCL3), which is a subtype of neuronal ceroid lipofuscinosis; NCL3 exhibits autosomal recessive inheritance. NCL3 is also called juvenile neuronal ceroid lipofuscinosis (JNCL) or Batten disease. The human gene implicated in this disease is CLN3, which affects palmitoyl-protein desaturation and plays a role in membrane-associated proteolipid modification. There is a single fly ortholog, Dmel\Cln3, for which an amorphic allele, RNAi-targeting constructs, and alleles caused by insertional mutagenesis have been generated.

Several UAS constructs of the human Hsap\CLN3 gene have been introduced into flies, including wild-type CLN3. Ubiquitous overexpression is semi-lethal; expression in various tissues results in visible phenotypes in the adult.

Animals homozygous for an amorphic mutation of Dmel\Cln3 are viable and fertile; they exhibit hypersensitivity to oxidative stress. Using UAS constructs of Dmel\Cln3, overexpression in the eye results in a rough, glazed eye phenotype; assays using this and other overexpression phenotypes have allowed characterization of genetic interactions, see the Cln3 gene report.

A YFP-fusion construct has allowed visualization of protein distribution. In Drosophila, this protein has restricted expression: it is detected in the larval CNS, predominantly in the glia that form the insect blood-brain-barrier; it is also strongly expressed in Malpighian tubules.

[updated Apr. 2017 by FlyBase; FBrf0222196]

Disease Summary Information
Parent Disease Summary: neuronal ceroid lipofuscinosis
Symptoms and phenotype

The neuronal ceroid lipofuscinoses (NCLs or CLNs) are a clinically heterogeneous group of neurodegenerative disorders; the general clinical course includes progressive dementia, seizures, and progressive visual failure (Mole et al., 2005; pubmed:15965709). [from MIM:256730; 2016.01.05]

Individuals with all forms NCL have shortened life expectancy, but it is highly variable, depending upon the form of the disease (from Medscape, http://emedicine.medscape.com/article/1178391-overview; 2016.01.05).

The term Batten disease may refer specifically to the juvenile-onset form, but is also used to refer to any NCL.

Specific Disease Summary: neuronal ceroid lipofuscinosis 3
OMIM report

[CEROID LIPOFUSCINOSIS, NEURONAL, 3; CLN3](https://omim.org/entry/204200)

Human gene(s) implicated

[CLN3 LYSOSOMAL/ENDOSOMAL TRANSMEMBRANE PROTEIN, BATTENIN; CLN3](https://omim.org/entry/607042)

Symptoms and phenotype

After a few years of normal development, children with juvenile-onset NCL develop progressive vision loss, intellectual and motor disability, speech difficulties, and seizures. Vision impairment is often the first noticeable sign of the disease, beginning between the ages of 4 and 8 years; most individuals survive to their twenties or thirties. [Genetics Home Reference: Juvenile Batten disease; 2016.01.05]

See general description of neuronal ceroid lipofuscinosis, above. CLN3 is most commonly a juvenile-onset form of the disease. [from MIM:204200; 2016.01.05]

Genetics

Neuronal ceroid lipofuscinosis 3 (CLN3) is inherited as an autosomal recessive and is caused by homozygous or compound heterozygous mutation in the CLN3 gene.

Cellular phenotype and pathology

The hallmark of CLN3 is the ultrastructural pattern of lipopigment with a 'fingerprint' profile, which can have 3 different appearances: pure within a lysosomal residual body; in conjunction with curvilinear or rectilinear profiles; and as a small component within large membrane-bound lysosomal vacuoles. The combination of fingerprint profiles within lysosomal vacuoles is a regular feature of blood lymphocytes from patients with CLN3 (Mole et al., 2005; pubmed:15965709). [from MIM:204200; 2016.01.05]

Molecular information

The CLN3 protein effects palmitoyl-protein desaturation and plays a role in membrane-associated proteolipid modification (Narayan et al., 2006; pubmed:17036287). [from MIM:204200; 2016.01.05] Palmitoylation functions as a reversible posttranslational modification to target signaling molecules to specialized membrane domains (Narayan et al., 2006; pubmed:17036287).

External links
Disease synonyms
Batten disease
ceroid lipofuscinosis, neuronal
ceroid lipofuscinosis, neuronal, 3
CLN3
JNCL
juvenile Batten disease
NCL3
neuronal ceroid lipofuscinosis
neuronal ceroid lipofuscinosis, juvenile
Search term: lipid storage disease
Search term: lysosomal storage disorder
Spielmeyer-Sjogren disease
Vogt-Spielmeyer disease
Ortholog Information
Human gene(s) in FlyBase
Human gene (HGNC)
D. melanogaster ortholog (based on DIOPT)
Comments on ortholog(s)

One to one: 1 human to 1 Drosophila (reciprocal best hit).

Other mammalian ortholog(s) used
    D. melanogaster Gene Information (1)
    Molecular function (GO)
    Gene Groups / Pathways
    Comments on ortholog(s)

    High-scoring ortholog of human CLN3 (1 Drosophila to 1 human). Dmel\cln3 shares 42% identity and 62% similarity with human CLN3.

    Orthologs and Alignments from DRSC
    DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
    Other Genes Used: Viral, Bacterial, Synthetic (0)
      Summary of Physical Interactions (0 groups)
      Alleles Reported to Model Human Disease (Disease Ontology) (1 alleles)
      Models Based on Experimental Evidence ( 1 )
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      Modifiers Based on Experimental Evidence ( 0 )
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      Alleles Representing Disease-Implicated Variants
      Genetic Tools, Stocks and Reagents
      Sources of Stocks
      Contact lab of origin for a reagent not available from a public stock center.
      Bloomington Stock Center Disease Page
      Related mammalian, viral, bacterial, or synthetic transgenes
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      Selected Drosophila transgenes
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      RNAi constructs available
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      Selected Drosophila classical alleles
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      Publicly Available Stocks
      amorphic allele - molecular evidence
      transposable element activity
      References (11)