FB2026_03 , released September 17, 2026
Human Disease Model Report: Dent disease 1
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General Information
Name
Dent disease 1
FlyBase ID
FBhh0001574
Overview

This report describes Dent disease 1, one of several related forms of hereditary renal tubular disorders caused by mutations in the CLCN5 gene, which encodes chloride voltage-gated channel 5, a member of the ClC family of chloride ion channels and ion transporters. Other related disorders include X-linked recessive nephrolithiasis (MIM:310468), X-linked recessive hypophosphatemic rickets (MIM:300554), and low molecular weight proteinuria (MIM:308990); there is disagreement as to whether these are separate, or phenotypic variants of a single disease. There is one high-scoring fly ortholog, Dmel\ClC-c, for which multiple genetic reagents, including loss of function alleles, RNAi-targeting constructs, and alleles caused by insertional mutagenesis have been generated.

Wild-type human CLCN5 has been introduced into flies, but has not been analyzed in the context of disease, nor been used to rescue Dmel\ClC-c alleles.

Dmel\ClC-c protein is observed to localized to the apical, but not basolateral, membrane of Malpighian tubules. RNAi-mediated knockdown of Dmel\ClC-c in Malpighian tubule principal cells results in an increase in precipitation of calcium oxalate, and formation of calcium oxalate crystals, in Malpighian tubules.

[updated May 2024 by FlyBase; FBrf0222196]

Disease Summary Information
Disease Summary: Dent disease 1
OMIM report

[DENT DISEASE 1; DENT1](https://omim.org/entry/300009)

Human gene(s) implicated

[CHLORIDE CHANNEL 5; CLCN5](https://omim.org/entry/300008)

Symptoms and phenotype

The term 'X-linked hypercalciuric nephrolithiasis' comprises several related forms of hereditary renal tubular disorders caused by mutations in the CLCN5 gene, including Dent disease, X-linked recessive nephrolithiasis (MIM:310468), X-linked recessive hypophosphatemic rickets (MIM:300554), and low molecular weight proteinuria (MIM:308990). Although these disorders are allelic and are all characterized by progressive proximal renal tubulopathy with hypercalciuria, low molecular weight proteinuria, and nephrocalcinosis, they vary in degree of severity and were originally reported as separate disorders. Some have considered these disorders as phenotypic variants of a single disease, referred to as the 'Dent disease complex' (Scheinman, 1998, pubmed:9452994; Gambaro et al., 2004, pubmed:15558518). [from MIM:300009; 2024.05.22]

Genetics

Dent disease 1 is caused by mutation in the CLCN5 gene on chromosome Xp11. [from MIM:300009; 2024.05.22]]

Cellular phenotype and pathology
Molecular information

CLCN5 encodes a member of the ClC family of chloride ion channels and ion transporters. The encoded protein is primarily localized to endosomal membranes and may function to facilitate albumin uptake by the renal proximal tubule. [provided by RefSeq, Jan 2013]

The CLCN5 gene encodes a voltage-gated chloride ion channel that belongs to a distinct branch of the chloride channel (CLC) family, which also includes CLCN3 and CLCN4 (Fisher et al., 1995, pubmed:8575751). [from MIM:300008; 2243.05.22]

External links
Disease synonyms
DENT1
low molecular weight proteinuria with hypercalciuric nephrocalcinosis
nephrolithiasis 2
nephrolithiasis, hypercalciuric
nephrolithiasis, hypercalciuric, X-linked
NPHL2
urolithiasis, hypercalciuric, X-linked
Ortholog Information
Human gene(s) in FlyBase
Human gene (HGNC)
D. melanogaster ortholog (based on DIOPT)
Comments on ortholog(s)

Many to one (many human to 1 Drosophila); CLCN5 has one high-scoring Drosophila ortholog, ClC-c.

Other mammalian ortholog(s) used
    D. melanogaster Gene Information (1)
    Gene Snapshot
    Chloride channel-c (ClC-c) encodes an intracellular chloride transporter that is involved in endosomal lumen acidification. [Date last reviewed: 2018-10-25]
    Gene Groups / Pathways
    Comments on ortholog(s)

    High-scoring ortholog of human CLCN3, CLCN4, CLCN5, moderate scoring ortholog of human CLCNKA, CLCNKB, CLCNK6 (1 Drosophila to many human).

    Orthologs and Alignments from DRSC
    DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
    Other Genes Used: Viral, Bacterial, Synthetic (0)
      Summary of Physical Interactions (1 groups)
      protein-protein
      Interacting group
      Assay
      References
      experimental knowledge based
      Alleles Reported to Model Human Disease (Disease Ontology) (1 alleles)
      Models Based on Experimental Evidence ( 1 )
      Modifiers Based on Experimental Evidence ( 0 )
      Allele
      Disease
      Interaction
      References
      Alleles Representing Disease-Implicated Variants
      Genetic Tools, Stocks and Reagents
      Sources of Stocks
      Contact lab of origin for a reagent not available from a public stock center.
      Bloomington Stock Center Disease Page
      Related mammalian, viral, bacterial, or synthetic transgenes
      Allele
      Transgene
      Publicly Available Stocks
      Selected Drosophila transgenes
      Allele
      Transgene
      Publicly Available Stocks
      RNAi constructs available
      Allele
      Transgene
      Publicly Available Stocks
      Selected Drosophila classical alleles
      Allele
      Allele class
      Mutagen
      Publicly Available Stocks
      loss of function allele
      CRISPR/Cas9
      loss of function allele
      CRISPR/Cas9
      References (4)