FB2026_03 , released September 17, 2026
Human Disease Model Report: epilepsy, familial focal, with variable foci 3
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General Information
Name
epilepsy, familial focal, with variable foci 3
FlyBase ID
FBhh0001621
Overview

This report describes epilepsy, familial focal, with variable foci 3 (FFEVF3); FFEVF3 exhibits autosomal dominant inheritance. The human gene implicated in this disease is NPRL3, which encodes a component of the GATOR1 complex; the GATOR1 complex is involved in cellular response to amino acid starvation and negative regulation of TORC1 signaling. There is a single orthologous gene in Drosophila, Dmel\Nprl3, for which a number genetic reagents have been generated, including an amorphic allele, RNAi-targeting constructs, and overexpression constructs.

The human NPRL3 gene has not been introduced into flies.

Animals homozygous for an amorphic allele of Dmel\Nprl3 typically die as pharate adults; surviving adults show reduced climbing ability. Systemic knockdown of Nprl3, effected by RNAi, results in epileptic-like behaviors in adults, as assayed by the bang-sensitive test. Abnormal synaptic morphology is observed at larval neuromuscular junctions.

[updated Mar. 2025 by FlyBase; FBrf0222196]

Disease Summary Information
Parent Disease Summary: epilepsy, familial focal, with variable foci
Symptoms and phenotype

Familial focal epilepsy with variable foci (FFEVF) is an uncommon form of recurrent seizures (epilepsy) that runs in families. Seizures associated with FFEVF can begin at any time from infancy to adulthood. The seizures are described as focal or partial, which means they begin in one region of the brain and do not cause a loss of consciousness. [MedlinePlus, Familial focal epilepsy with variable foci; 2025.02.19]

Familial focal epilepsy with variable foci (FFEVF) is a form of epilepsy characterized by focal seizures arising from different cortical regions, including the temporal, frontal, parietal, and occipital lobes. A subset of patients have structural brain abnormalities, particularly focal cortical dysplasia (FCD) (summary by Ricos et al., 2016; pubmed:26505888). [from MIM:617118; 2025.02.19]

Specific Disease Summary: epilepsy, familial focal, with variable foci 3
OMIM report

[EPILEPSY, FAMILIAL FOCAL, WITH VARIABLE FOCI 3; FFEVF3](https://omim.org/entry/617118)

Human gene(s) implicated

[NITROGEN PERMEASE REGULATOR-LIKE 3; NPRL3](https://omim.org/entry/600928)

Symptoms and phenotype

Familial focal epilepsy with variable foci 2 (FFEVF2) is characterized by focal seizures arising from different cortical regions, including the temporal, frontal, parietal, and occipital lobes. Seizure types commonly include temporal lobe epilepsy (TLE), frontal lobe epilepsy (FLE), and nocturnal frontal lobe epilepsy (NFLE). [from MIM:617118; 2025.02.24]

Genetics

Familial focal epilepsy with variable foci-3 (FFEVF3) is caused by heterozygous mutation in the NPRL3 gene. [from MIM:617118; 2025.02.24]

Cellular phenotype and pathology
Molecular information

NPRL3 encodes a component of the GATOR1 complex; involved in cellular response to amino acid starvation and negative regulation of TORC1 signaling. [GeneCards, NPRL3; 2025.03.02]

External links
Disease synonyms
epilepsy, partial, with variable foci
FFEVF3
Ortholog Information
Human gene(s) in FlyBase
    Human gene (HGNC)
    D. melanogaster ortholog (based on DIOPT)
    Comments on ortholog(s)

    One to one: 1 human gene to 1 Drosophila gene.

    Other mammalian ortholog(s) used
      D. melanogaster Gene Information (1)
      Gene Snapshot
      Nitrogen permease regulator-like 3 (Nprl3) encodes a component of the highly conserved GAP activity towards rags 1 (GATOR1) complex, which inhibits the product of mTor activity in response to amino acid starvation. The product of Nprl3, as well as the other GATOR1 components encoded by Nprl2 and Iml1, regulates early meiotic progression. [Date last reviewed: 2019-03-14]
      Molecular function (GO)
      Gene Groups / Pathways
      Comments on ortholog(s)

      High-scoring ortholog of human NPRL3 (1 Drosophila to 1 human).

      Orthologs and Alignments from DRSC
      DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
      Other Genes Used: Viral, Bacterial, Synthetic (0)
        Summary of Physical Interactions (6 groups)
        protein-protein
        Interacting group
        Assay
        References
        anti tag coimmunoprecipitation, anti tag western blot, tandem affinity purification, Identification by mass spectrometry
        anti tag coimmunoprecipitation, anti tag western blot, peptide massfingerprinting
        anti tag coimmunoprecipitation, anti tag western blot
        pull down, autoradiography
        anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based
        anti tag coimmunoprecipitation, anti tag western blot
        Alleles Reported to Model Human Disease (Disease Ontology) (1 alleles)
        Models Based on Experimental Evidence ( 1 )
        Modifiers Based on Experimental Evidence ( 0 )
        Allele
        Disease
        Interaction
        References
        Alleles Representing Disease-Implicated Variants
        Genetic Tools, Stocks and Reagents
        Sources of Stocks
        Contact lab of origin for a reagent not available from a public stock center.
        Bloomington Stock Center Disease Page
        Related mammalian, viral, bacterial, or synthetic transgenes
        Allele
        Transgene
        Publicly Available Stocks
        Selected Drosophila transgenes
        Allele
        Transgene
        Publicly Available Stocks
        RNAi constructs available
        Allele
        Transgene
        Publicly Available Stocks
        Selected Drosophila classical alleles
        Allele
        Allele class
        Mutagen
        Publicly Available Stocks
        References (5)