FB2026_02 , released June 18, 2026
Human Disease Model Report: mitochondrial ECHS1 deficiency
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General Information
Name
mitochondrial ECHS1 deficiency
FlyBase ID
FBhh0001627
Disease Ontology Term
Parent Disease
Overview

This report describes mitochondrial ECHS1 deficiency (mitochondrial short-chain enoyl-CoA hydratase 1 deficiency; ECHS1D). ECHS1D exhibits autosomal recessive inheritance. The human gene implicated, ECHS1, encodes a protein that functions in the mitochondrial fatty acid beta-oxidation pathway; it also plays a role in leucine, isoleucine and valine catabolism. There is a single orthologous gene in Drosophila, Echs1, for which a number of genetic reagents have been generated including a null allele, RNAi-targeting constructs and overexpression contructs.

Multiple UAS constructs of human Hsap\ECHS1 have been introduced into flies, including wild-type and a variant implicated in ECHS1D; see the 'Disease-Implicated Variants' table below. Partial heterologous rescue (functional complementation) has been demonstrated for the larval lethality phenotype of a Dmel\Echs1 amorphic mutation.

Animals homozygous for a null mutation of Dmel\Echs1 die during the larval stage, typically during the second larval instar. First instar larvae exhibit locomotor impairment. Metabolites linked to ECHS1D pathogenesis in humans are be highly elevated in Dmel\Echs1 null animals. Dietary restriction of valine was tested in this model: Echs1-null larvae fed diets with reduced valine content exhibit significant extensions to survival; however, wild-type larvae fed the same diets exhibit reduced rates of survival to the pupal stage.

[updated June 2025 by FlyBase; FBrf0222196]

Disease Summary Information
Disease Summary: mitochondrial ECHS1 deficiency
OMIM report

[MITOCHONDRIAL SHORT-CHAIN ENOYL-CoA HYDRATASE 1 DEFICIENCY; ECHS1D](https://omim.org/entry/616277)

Human gene(s) implicated

[ENOYL-CoA HYDRATASE, SHORT-CHAIN, 1, MITOCHONDRIAL; ECHS1](https://omim.org/entry/602292)

Symptoms and phenotype

Mitochondrial short-chain enoyl-CoA hydratase-1 deficiency (ECHS1D) is an autosomal recessive inborn error of metabolism characterized by severely delayed psychomotor development, neurodegeneration, increased lactic acid, brain lesions in the basal ganglia, and dystonia (summary by Peters et al., 2014; pubmed:25125611). [from MIM:616277; 2025.03.25]

Genetics

ECHS1D) is caused by homozygous or compound heterozygous mutation in the ECHS1 gene. [from MIM:616277; 2025.03.25]

Cellular phenotype and pathology
Molecular information

ECHS1 encodes a protein that localizes to the mitochondrial matrix and functions in the second step of the mitochondrial fatty acid beta-oxidation pathway. It also plays a role in metabolism of leucine, isoleucine and valine (branched-chain amino acids). [from GeneCards, ECHS1; 2025.03.25]

External links
Disease synonyms
ECHS1D
mitochondrial short-chain enoyl-CoA hydratase 1 deficiency
short-chain enoyl-CoA hydratase 1 deficiency
Ortholog Information
Human gene(s) in FlyBase
Human gene (HGNC)
D. melanogaster ortholog (based on DIOPT)
Comments on ortholog(s)

One to one: 1 human gene to 1 Drosophila gene.

Other mammalian ortholog(s) used
    D. melanogaster Gene Information (1)
    Cellular component (GO)
    Gene Groups / Pathways
    Comments on ortholog(s)

    High-scoring ortholog of human ECHS1 (1 Drosophila to 1 human).

    Orthologs and Alignments from DRSC
    DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
    Other Genes Used: Viral, Bacterial, Synthetic (0)
      Summary of Physical Interactions (28 groups)
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      Alleles Reported to Model Human Disease (Disease Ontology) (2 alleles)
      Models Based on Experimental Evidence ( 1 )
      Modifiers Based on Experimental Evidence ( 1 )
      Models Based on Experimental Evidence ( 0 )
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      Evidence
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      Modifiers Based on Experimental Evidence ( 1 )
      Alleles Representing Disease-Implicated Variants
      Genetic Tools, Stocks and Reagents
      Sources of Stocks
      Contact lab of origin for a reagent not available from a public stock center.
      Bloomington Stock Center Disease Page
      Related mammalian, viral, bacterial, or synthetic transgenes
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      References (7)