FB2026_03 , released September 17, 2026
Physical Interaction report
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General Information
Interaction Type
Interacting Genes
FlyBase ID
FBig0000034716
Interaction Network
Interactions Browser links
snf network
U2A network
Reported Interactions
FBrf0138511-1.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
U2A 

U2A-prime

bait
snf 

SNF

prey
snf 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
snf 
N-terminal RRM motif
unspecified role
aa 41-45

necessary: mutation of VALKT sequence to U1A-like LVSRS sequence abolishes interaction

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Bait endogenous to adult extract.

Prey endogenous to adult extract.

The 5MER snf mutation, which changes residues 41-45 from VALKT to U1A-like LVSRS, abolishes the interaction of full length snf and U2A proteins.

The E21D snf mutation in the N-terminal RRM motif does not affect snf interaction with U2A protein.

FBrf0138511-2.Y2H
Description
physical association
Assay
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
snf 

SNF

bait

fused to DNA-binding domain

snf 
snf 
U2A 

U2A-prime

prey

fused to GAL4 activation domain

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
snf 
N-terminal RRM motif
unspecified role
aa 1-97aa 21aa 41-45

necessary: E21D mutation abolishes interaction in N-terminal constructs (aa 1-97)

necessary: mutation of VALKT sequence to U1A-like LVSRS sequence abolishes interaction

snf 
C-terminal RRM motif
unspecified role
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Both the N-terminal and C-terminal RRM motifs of snf can interact with U2A protein.

The 5MER snf mutation, which changes residues 41-45 from VALKT to U1A-like LVSRS, abolishes the interaction of full length snf and U2A proteins.

The E21D snf mutation has only a weak effect on the interaction of full length snf with U2A. However, in the context of a truncated snf protein lacking the C-terminal RRM motif, the E21D snf mutation does abolish the interaction with U2A.

Two-hybrid system: yeast GAL4-BD/GAL4-AD.

FBrf0192968-3.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
snf 

SNF

bait
U2A 

U2A'

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was embryos of wild-type fly line; bait produced from endogenous gene; prey produced from endogenous gene.

Positive control.

FBrf0192968-4.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
U2A 

U2A'

bait
snf 

SNF

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Positive control.

Source was embryos of wild-type fly line; bait produced from endogenous gene; prey produced from endogenous gene.

FBrf0192968-7.PD.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
U2A 

U2A'

bait

GST tag

snf 

SNF

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Positive control.

Interaction in vitro; bait produced as a recombinant fusion protein in bacterial system; prey derived from wild-type embryonic extract.

FBrf0204177-12.PD.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
U2A 

U2A

bait

GST tag

snf 

Snf

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced as a recombinant fusion protein in bacterial system; prey derived from wild-type embryonic extract.

FBrf0210202-4.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
U2A 

U2A

bait
snf 

snf

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was embryos of wild-type fly line; bait produced from endogenous gene; prey produced from endogenous gene.

FBrf0218395-6729.DPiM
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
snf 
unspecified role
snf 
unspecified role
snf 
unspecified role
U2A 
unspecified role
U2A 
unspecified role
U2A 
unspecified role
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

HGScore = 160.83549

FBrf0225214-3.ITC
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
U2A 

U2A

bait
snf 

snf

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced as a recombinant fusion protein in bacterial system; prey produced as a recombinant fusion protein in bacterial system.

FBrf0233349-30.coIP.MS
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
snf 

U2B

bait

FLAG tag

U2A 

U2A

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was cell extract of S2 cell line; bait produced from transfected construct; prey produced from endogenous gene.

FBrf0239188-17.XC
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
snf 

dSNF

neutral component
snf 

dSNF

neutral component
snf 
snf 

dSNF

neutral component
snf 
U2A 

dU2A

neutral component
U2A 

dU2A

neutral component
U2A 

dU2A

neutral component
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
snf 
RRM domain
sufficient binding region
aa 1-96
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; proteins produced as a recombinant fusion protein in bacterial system.

Structures of snf-U2A binary complex as well as of snf-U2A-U1 snRNA and snf-U2A-U2 snRNA ternary complexes.

FBrf0239188-18.NMR
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
snf 

dSNF

neutral component
snf 

dSNF

neutral component
snf 
snf 

dSNF

neutral component
snf 
U2A 

dU2A

neutral component
U2A 

dU2A

neutral component
U2A 

dU2A

neutral component
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
snf 
RRM domain
sufficient binding region
aa 1-96
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; proteins produced as a recombinant fusion protein in bacterial system.

FBrf0239188-19.ITC
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
U2A 

dU2A

bait
snf 

dSNF

prey
snf 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
snf 
RRM domain
sufficient binding region
aa 1-101
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; proteins produced as a recombinant fusion protein in bacterial system.

Kd = 4.2nM

External Crossreferences and Linkouts ( 1 )
Linkouts
MIST - An integrated Molecular Interaction Database
References (8)