FB2026_02 , released June 18, 2026
Transcript: Dmel\Cnot4-RE
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General Information
Symbol
Dmel\Cnot4-RE
Species
D. melanogaster
Annotation Symbol
CG31716-RE
FlyBase ID
FBtr0080012
Feature type
mRNA
Associated gene
Dmel\Cnot4
Evidence Rank
Length (nt)
3554
Evidence Score
Genomic Location
Genomic Maps
cDNA Clones Consistent with the Transcript ( 49 )
cDNA Clones, Fully Sequenced
Exact Match
    Contained within the annotated transcript, internally consistent
      End(s) extend beyond the annotated transcript, internally consistent
        cDNA Clones, End Sequence Only (ESTs)
        Contained within the annotated transcript, internally consistent
        End(s) extend beyond the annotated transcript, internally consistent
          Sequence
          Sequence Downloader
          CGATAGTTTGAGCTGTGGAAAAAAATCGAATGTTTCTTGTGGAAAAAATTGGAGTCTTTAATTTGGCGAATCCATTCGTT
TACTTTGCGTTTATTTTTAGCCTTAGTACTTTCGTTTGATACGTTTGCTACCAAGTATTTATAAAAATTAAAAAGCGTTC
AAAAACACAATTAACCATTGCAACGTCGTTTCATCAGCTATTCAGACTTGGTTCTCATCATTATCAACAATTTTATAAAA
ATTACAACTGCGAGTACTTCATCACTAATCAACAAATCACCTGAAAATGAACGGCCTGAGCAGCAATGATGATGCAGTCG
AGTGCCCTTTGTGTATGGAGCCGCTTGAGGTGGACGATCTGACCTTCTTTCCGTGTACCTGCGGATATCAGATTTGCCGA
TTCTGTTGGCATAGGATCCGCACGGATGAGAACAAGCTGTGTCCGGCATGCCGAAAGGAGTATCCCGAGAATCCAGCTGA
CTTCAAGCCGCTGTCGCAGGAGGAAATGATTGCCTTCAAGTCCCAGAAACGCCAAAGGGACCAACAACGAAAACAAAAGA
TCACCGAGAACCGCAAACACTTGGCCAACGTTCGCGTTGTCCAAAAGAACTTGGTGTTCGTTGTGGGGCTACCGCCACGA
CTTGCTGATGCAGACATATTAAAGAAACACGAGTATTTCGGTAAATATGGGAAAATTCATAAAGTCGTTATAAATCCAAG
TACCACGTATGCCGGGGTCCAGGGTCCATCTGCTTCTGCGTATGTCACATATGTTAATAACTCGGATGCCTTGCGGGCCA
TTCAAAGCGTCAATAATATTATGATAGACGGTCGGCTTATAAAGACCAGCTTGGGGACAACCAAATACTGTAGCCACTTC
ATGAAGAACCAGCAGTGTCCCAAGGGCGACTGCATGTACTTACATGAATTGGGCGATCCCGAGGCCAGTTTCACAAAGGA
GGAAATGCATCAGGGAAAGCACCTGGAGTACGAGAAGCGCCTGCACGATACTCTAATTGCGTCATTGGGACCGAATGCAA
CAGGTATTGTAAATGTCGCGATTCCATCGTCATCGTCAGCGTCATCCTCGTCCTCTGGATCGGGTACAAATGGTTCAAGT
GCATCAGGTAATGCCCAGCAAAAGGAGGCCTGGCCAAGCTTATCGGTCTCGCCCATCAATGGCAAAGAGGCGGCTGCCAC
TGCGACCAGTTCCAGTGGGAAAAGTAAACGGGAAAAGCTGCGCAACGAGAAGAGGCACGAGAAGAACAAGGCGAAGAATA
AGAACGGCAGCAATACAAACGCCAATGCCTCGAACAAGGAGAACTATGTTCCCGAAACGAGAAGCAGCACAAGTACTGAG
ACATTCGCAGAGGCTACGGCGGATGCACCGGCTTCCACCAAGGCAGAACCGCCGCAAGCCTCTAGCAATAGAACGAGGGC
GGATCGTGGAAAAGATCGGACCACGGCTAGTGCAAAGGAGCAGAAGAAGAGCAAGGAAGCTGCTCCAGCACCTGCAGCAA
GTAAACCGGCGGAGCGGGTTGAAACAAGCGAGAGTACAATAAGACAAAAGAAGGCGGAAGTAACAGAAAGCTGTGAAGAT
AACTTACCACAAAAGAGATTAGCGGGAACAAACGTTCAAAGATCTGTGAGCTCTTGTAGCGAAAATAGCGAAGGACACGT
CTCTGAGAGTAGCTTAAGTGAGAAGAGTTTAACTGGTGATTATGTGGAGGAAAAGTGCAATAGTGTGAATTCGGAAAGCC
AGCAAGAAAGTGTAAAGTTTCAGGAGGAGCTCGAAAAGAGCAACGAGGCAATTGTCGAGGCCGAAACGATTCTGCCAACA
GCTGAGTCCTCTGAGGACATCAGTCCCGCTGCAGTTGCGCCAGGCAATGGAGAAGTCGAAGGATGCTTACCCGTTGTTGA
TCCAGTCGAACCACCGAGTCTGGCGGATAATGGAAGCAGAGTAACAGATGCGCTATCTAAGCTGAACATTTTCGATGACA
CGCCTAGCTTTTTCACATCGCCATCATTCCAGCAAGCACCCATATTAAAGAATAAGCTAGATTTGGAAATGCGACAGTCT
CATTTACCTGACTTGGTCAACGACATTGATGGAATCCAAAAGGCATCCAATACAAACGAGTGGGAGGAAGCCTTCAAAAA
TGTGATGATGGGCAACACGCAGCACATGGAGGAGCAACTGTTGCAGCAGCAACATTTGCAGCAGCATCAGAATTTGCGCC
ACCAGCTGGTGTTGCAACAGGAGGAGTTCCTTCGCATGCAAGAATTACAGAAACGCAACAACTTTGCGACGCAAATCAAC
GGTCCTGCGAATGATTTCCTTAGAGCTTATGAGCTCAGAGCTCAAGCCAATGCAATCATTCAGCAACAATTATTACAACA
GCACGCAGGCGAAAATCTATTTGGCGGCAACATGTCGAAGTTCTTCGATTTCCATAAAAGTCAGCCGCAGTCACACCATC
AGTATCTAAATGGACATCCGCCTCAAATCAATGGGAACGGTGCTGTGCCGGAGCCGCAAAGAGTGGCGGCCTCTTTGGAA
AGCAATCGACTGAATTCGCCTTTTGTCGAAAATGGACTTATTAACTCGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACA
AAAGCAGAGAATGATGGGAATGTATGAATTTATGCCTCCAAACACGCAATCTCAGCAGAATCGGTTTACACAGAACTCGA
TAGTCGACGATGACTTAGGATTCGACCCGTTCGTTGAGACCCAAAAGGGACTTGCTGAACTTATGGAAAATGAGGTGGTC
CAAAAACAGAGTATTAATAATGAGAACCCCTTGCCGAAGTTGCCGCCACAGCCTCAAGTTCCACCCCATCCGCAATTGGT
GGACAACCTGCAGCGAGCTCGCATGCCGCCGCCAGGCTTCAATCACGTCAACACATTGGGCTTGGGCGGTGCATCCAGAC
TGCAGCTCACCAGCAAAATAATACCCTTCATGAACATGCCCGTCAATGGGGTGGGCAACAGCGGTGCCCAGGGACAGCAC
CAAATGCCAATGGGTGTCAACTGGAATGCGCCGATGGGCATGCACCAGAACCCGGGACAGCCCGTGGGTGATTCGCAATT
GCAGCATCCAATGGCTCACAACAAGGTTTACAACAACAGTGATTGGACTTCAATGGATCCGGCTATACTTTCGTTTAGAC
AGTATTCTTCTTTTCCACAAAACCAAATTCCCCCACATCCTCAGCAGCAACAGGATTTATTTTTGCAGCATTTGGCTCAA
CAGCAAAATTCCCAGAGTGGTGGTTTCAACAACCAGGCACAGCAAATGCTTCCTATGGGGATGCCCAATAGTTTGCTGAA
CGGACAACAAACGCAGCCGCCACAGGTCAATGCCAATGTTCAGGGCATGCTTGAGTTTTTAAAAAGCCGTCAATTCGTTT
AGCTACAATACATATAAATAATACATTTGTTTACCTGTACTCTTTATTAAATATTTCTTAAAGTAAATATAGGCAAAATA
AAATTCGAATATAATGAAACTACATGATACAAAC
          Other Products of this Gene
          Other Transcripts
          Name
          FlyBase ID
          Length (nt)
          Cnot4-RA
          FBtr0080009
          3615
          Cnot4-RB
          FBtr0080013
          3644
          Cnot4-RC
          FBtr0080010
          3552
          Cnot4-RD
          FBtr0080011
          3482
          Cnot4-RG
          FBtr0080014
          3370
          Cnot4-RH
          FBtr0304112
          3963
          Cnot4-RI
          FBtr0304113
          3603
          Cnot4-RJ
          FBtr0331637
          3826
          Cnot4-RK
          FBtr0331638
          3972
          Cnot4-RL
          FBtr0331639
          3612
          Polypeptides
          Derived from THIS transcript
          Name
          FlyBase ID
          Length (aa)
          Cnot4-PE
          FBpp0079602
          1051
          Derived from OTHER transcripts
          Name
          FlyBase ID
          Length (aa)
          Cnot4-PA
          FBpp0079599
          1051
          Cnot4-PB
          FBpp0079603
          1051
          Cnot4-PC
          FBpp0079600
          1051
          Cnot4-PD
          FBpp0079601
          1051
          Cnot4-PG
          FBpp0079604
          1047
          Cnot4-PH
          FBpp0293055
          1059
          Cnot4-PI
          FBpp0293056
          1047
          Cnot4-PJ
          FBpp0304027
          1054
          Cnot4-PK
          FBpp0304028
          1062
          Cnot4-PL
          FBpp0304029
          1050
          Comments

          Only one EST supports this alternative transcript

          Transcript terminates at site supported by polyadenylated cDNA.

          External Crossreferences and Linkouts ( 1 )
          Crossreferences
          RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
          Synonyms and Secondary IDs (3)
          Reported As
          Symbol Synonym
          CG31716-RE
          (FlyBase, 1996-)
          CG5244-RE
          Cnot4-RE
          Secondary FlyBase IDs
            References (2)