A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Dmel\P{EP}homerEP2141 Insertion

General Information
Symbol Dmel\P{EP}homerEP2141 Species D. melanogaster
Name FlyBase ID FBti0010879
Feature type transposable_element_insertion_site
Description
Inserted element P{EP} Expression data
Affected gene(s) homer, Liprin-α Viability / fertility
Causes allele(s) homerEP2141 Stock availability 1 publicly available
LINE ID EP(2)2141
Genomic Location
Chromosomal location 2L ( 27A1 ) Sequence location 2L:6,723,346..6,723,346 [-]
Map ( GBrowse ) detailed view FBti0041118 FBti0124613_2 FBti0124613_1 FBti0044090 FBti0126877 FBti0040234 FBti0025960 FBti0057825 FBti0106743 FBti0113208 FBti0126876 FBti0041666 FBti0056877 FBti0099903 FBti0036838 FBti0033604 FBti0025740 FBti0113476 FBti0013467 FBti0010879 FBti0053096 FBti0124614_1 FBti0124614_2 FBti0066541 FBti0025682 FBti0072356 FBti0109266 FBti0075960 FBti0056831 FBti0043833 FBti0065061 FBti0047492 FBti0050773
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Description
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This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
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FB2012_01
FB2011_10
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hide Detailed Mapping Data
Chromosome (arm)
Sequence Location
2L:6,723,346..6,723,346 [-]
(BDGP Project Members, 2000-)
Orientation
Cytological location
(computed by FlyBase)
27A1 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
27A1-27A1 (reported as inferred from sequence location)
(BDGP Project Members, 2000-)
Comments concerning
location
hide Sequence Data
Flanking sequence
AQ072932
(FlyBase, 1992-,  
hide Inserted Element
Construct P{EP}
Location-dependent
role
mobile activating element (UASG)
(Rorth, 1996)
Size 7.987Kb
Associated alleles
Scer\UAS14x.hs
TrlBRcRa
w+mC
Molecular map
hide Affected Gene(s)
Insertion may
affect gene
homer
(BDGP Project Members, 2000-, Diagana et al., 2002, FlyBase Curators, 2008)
Liprin-α
(Diagana et al., 2002, Kaufmann et al., 2002)
hide Alleles and Phenotypes
Causes alleles
homerEP2141
(FlyBase Curators, 2008)
Lethality
References
Sterility
References
hide Phenotype Manifest In
hide Detailed Description
Statement
Reference
hide Expression Data
Reporter Expression
Additional Information
Statement
Reference
Marker for
Reflects
expression of
hide External Images
FlyView (LinkOut)
hide Data on Genetic Line
Line ID
EP(2)2141
(Gene Disruption Project members, 2001-)
Origin as a multiple insertion line
hide Progenitor(s) within the Genome
hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 1 )
Bloomington
17027
w1118; P{EP}homerEP2141
hide Linkouts
hide Comments
Location 2L:6723346-6723347 confirmed by FlyBase alignment of dbGSS accession AQ072932 to D. melanogaster arm Release_4 and heterochromatin Release_3.2b. Insertion orientation confirmed.
(FlyBase, 2005)
insertion of mobile activating element
(BDGP Project Members, 1994-1999)
hide Synonyms & Secondary IDs
Reported As
Symbol Synonym
EP(2)2141
(FlyBase, 1992-)
P{EP}EP2141
(Kaufmann et al., 2002, FlyBase, 2005, FlyBase, 1992-)
P{EP}homerEP2141
(FlyBase, 1992-)
Secondary FlyBase IDs
hide References ( 12 )
Research paper
Bellen et al., 2004, Genetics 167(2): 761--781
The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. [FBrf0179132]
Diagana et al., 2002, J. Neurosci. 22(2): 428--436
Mutation of Drosophila homer disrupts control of locomotor activity and behavioral plasticity. [FBrf0141617]
Kaufmann et al., 2002, Neuron 34(1): 27--38
Drosophila liprin-alpha and the receptor phosphatase Dlar control synapse morphogenesis. [FBrf0147174]
Spradling et al., 1999, Genetics 153(1): 135--177
The Berkeley Drosophila genome project gene disruption project. Single P-element insertions mutating 25% of vital Drosophila genes. [FBrf0111489]
Rorth, 1996, Proc. Natl. Acad. Sci. USA 93(22): 12418--12422
A modular misexpression screen in Drosophila detecting tissue-specific phenotypes. [FBrf0090768]
Supplementary material
Babu et al., 2004, Genes Dev. 18(2):
Supplementary material: Fly strains. Fish and immunoflourescence in ovaries. Drug treatment. Immunoprecipitation experiments and western blotting. [FBrf0178907]
FlyBase analysis
FlyBase Curators, 2008, Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations.
Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. [FBrf0202955]
FlyBase, 2005, Assessment of transgenic construct insertion sites.
Assessment of transgenic construct insertion sites. [FBrf0184339]
FlyBase, 1992-, FlyBase curation
FlyBase curation. [FBrf0105495]
Computer file
Gene Disruption Project members, 2001-, [title not yet available]
[title not yet available] [FBrf0132177]
BDGP Project Members, 2000-, Berkeley Drosophila Genome Project.
Berkeley Drosophila Genome Project. [FBrf0125078]
BDGP Project Members, 1994-1999, Berkeley Drosophila Genome Project.
Berkeley Drosophila Genome Project. [FBrf0067338]