A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Dmel\P{EP}CG9650EP1340 Insertion

General Information
Symbol Dmel\P{EP}CG9650EP1340 Species D. melanogaster
Name FlyBase ID FBti0011880
Feature type transposable_element_insertion_site
Description
Inserted element P{EP} Expression data
Affected gene(s) CG9650, EP1340 Viability / fertility
Causes allele(s) CG9650EP1340, EP1340EP1340 Stock availability 1 publicly available
LINE ID EP(X)1340
Genomic Location
Chromosomal location X ( 7A3 ) Sequence location X:7,089,130..7,089,130 [-]
Map ( GBrowse ) detailed view FBti0052765 FBti0057297 FBti0069007 FBti0029254 FBti0035433 FBti0035384 FBti0033516 FBti0028824 FBti0028651 FBti0011880 FBti0107752 FBti0035509 FBti0055148 FBti0021340 FBti0110775 FBti0069212 FBti0103709 FBti0054788 FBti0036787 FBti0032063 FBti0029615 FBti0070503 FBti0037363 FBti0029863 FBti0036316 FBti0034136 FBti0028109 FBti0033907 FBti0035560 FBti0069976 FBti0007530 FBti0067187 FBti0048913 FBti0052755 FBti0048931 FBti0017176 FBti0055329
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Description
What does this section display?
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FB2012_01
FB2011_10
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hide Detailed Mapping Data
Chromosome (arm)
Sequence Location
X:7,089,130..7,089,130 [-]
(BDGP Project Members, 2000-)
Orientation
Cytological location
(computed by FlyBase)
7A3 ( inferred by FlyBase from sequence location )
Cytological location
(reported)
7A1-7A1 (reported as inferred from sequence location)
(BDGP Project Members, 2000-)
7A1-7A2 (in situ hybridization reported)
(BDGP Project Members, 1994-1999)
Comments concerning
location
hide Sequence Data
Flanking sequence
AQ073202
(FlyBase, 1992-,  
hide Inserted Element
Construct P{EP}
Location-dependent
role
mobile activating element (UASG)
(Rorth, 1996)
Size 7.987Kb
Associated alleles
Scer\UAS14x.hs
TrlBRcRa
w+mC
Molecular map
hide Affected Gene(s)
Insertion may
affect gene
CG9650
(FlyBase, 1996-)
EP1340
(Pena-Rangel et al., 2002, Zhu et al., 2005, FlyBase, 1996-)
hide Alleles and Phenotypes
Causes alleles
CG9650EP1340
(FlyBase, 1996-)
EP1340EP1340
(Pena-Rangel et al., 2002, Zhu et al., 2005, FlyBase, 1996-)
Lethality
References
Sterility
References
hide Phenotype Manifest In
hide Detailed Description
Statement
Reference
pnrMD237/+ adults expressing EP1340EP1340 under the control of Scer\GAL4pnr-MD237 have a deformed scutellum.
(Pena-Rangel et al., 2002)
hide Expression Data
Reporter Expression
Additional Information
Statement
Reference
Marker for
Reflects
expression of
hide External Images
FlyView (LinkOut)
hide Data on Genetic Line
Line ID
EP(X)1340
(Gene Disruption Project members, 2001-)
Origin as a multiple insertion line
hide Progenitor(s) within the Genome
hide Related Aberration or Balancer
Aberration
Balancer
hide Stocks ( 1 )
Bloomington
11253
w1118 P{EP}CG9650EP1340 EP1340EP1340
hide Linkouts
hide Comments
Location X:7040333-7040334 confirmed by FlyBase alignment of dbGSS accession AQ073202 to D. melanogaster arm Release_4 and heterochromatin Release_3.2b. Insertion orientation confirmed.
(FlyBase, 2005)
insertion of mobile activating element
(BDGP Project Members, 1994-1999)
hide Synonyms & Secondary IDs
Reported As
Symbol Synonym
P{EP}CG9650EP1340
(FlyBase, 2005, FlyBase, 1992-)
P{EP}EP1340
(FlyBase, 1992-)
P{EP}EP1340EP1340
(FlyBase, 1992-)
Secondary FlyBase IDs
hide References ( 11 )
Research paper
Zhu et al., 2005, Genetics 170(2): 767--777
A screen for genes that influence fibroblast growth factor signal transduction in Drosophila. [FBrf0187664]
Bellen et al., 2004, Genetics 167(2): 761--781
The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. [FBrf0179132]
Pena-Rangel et al., 2002, Genetics 160(3): 1035--1050
A misexpression study examining dorsal thorax formation in Drosophila melanogaster. [FBrf0147055]
Spradling et al., 1999, Genetics 153(1): 135--177
The Berkeley Drosophila genome project gene disruption project. Single P-element insertions mutating 25% of vital Drosophila genes. [FBrf0111489]
Rorth, 1996, Proc. Natl. Acad. Sci. USA 93(22): 12418--12422
A modular misexpression screen in Drosophila detecting tissue-specific phenotypes. [FBrf0090768]
FlyBase analysis
FlyBase, 2005, Assessment of transgenic construct insertion sites.
Assessment of transgenic construct insertion sites. [FBrf0184339]
FlyBase, 1996-, FlyBase inference based on genome sequence analysis.
FlyBase inference based on genome sequence analysis. [FBrf0104946]
FlyBase, 1992-, FlyBase curation
FlyBase curation. [FBrf0105495]
Computer file
Gene Disruption Project members, 2001-, [title not yet available]
[title not yet available] [FBrf0132177]
BDGP Project Members, 2000-, Berkeley Drosophila Genome Project.
Berkeley Drosophila Genome Project. [FBrf0125078]
BDGP Project Members, 1994-1999, Berkeley Drosophila Genome Project.
Berkeley Drosophila Genome Project. [FBrf0067338]