FlyBase Aberration Report: Dmel\Df(2R)BSC269

General Information

Symbol

Df(2R)BSC269

Species

D. melanogaster

Name

FlyBase ID

FBab0044970

Feature type

chromosomal_deletion

Computed Breakpoints include

[44E3-44E3];[44F3-44F3];

Features within 44E3--44F3

Genomic Maps

JBrowse

Sequence coordinates

2R:8,722,439..8,722,439 (Df(2R)BSC269:bk1)

(Bloomington Drosophila Stock Center, 2008.8.7)

2R:8,898,753..8,898,753 (Df(2R)BSC269:bk2)

(Bloomington Drosophila Stock Center, 2008.8.7)

Member of large scale dataset(s)

Dfs_BSC_set2

A set of ~800 largely isogenic deficiency stocks created by FLP-induced recombination between FRT-carrying transgenic insertions; molecularly defined deletion endpoints correspond to initial location of the progenitor insertions. Designed to fill gaps in deletion coverage and breakpoint placement; also used to replace older available deficiencies that have not been molecularly mapped.

(Cook et al., 2012)

Nature of Aberration

Cytological Order

Progenitor

PBac{RB}Sec31^e00167

(Christensen and Cook, 2007.3.22)

P{XP}d05785

(Christensen and Cook, 2007.3.22)

Mutagen

FLPase

(Christensen and Cook, 2007.3.22)

Class of aberration (relative to wild type)

chromosomal_deletion

(FlyBase, 2007)

Class of aberration (relative to progenitor)

chromosomal_deletion

(Christensen and Cook, 2007.3.22)

Breakpoints

44E3;44F3

(FlyBase Curators, 2008)

Causes alleles

Carries alleles

Transposon Insertions

P+PBac{XP5.RB3}BSC269

(Christensen and Cook, 2007.3.22)

Formalized genetic data

Genetic mapping information

Comments

Breakpoint from FlyBase's release 5 sequence location of progenitor insertion.

(Bloomington Drosophila Stock Center, 2008.8.7)

Comments on Cytology

The Gene Disruption project determined the insertion site of P{XP}d05785 to be at Release 3 genomic coordinate 3783186 on arm 2R. This corresponds to 44E3 on the Release 3 and 4

(Christensen and Cook, 2007.3.22)

genome maps. The predicted position of PBac{RB}sec31^e00167 on the

(Christensen and Cook, 2007.3.22)

Release 4 map is 44F3. Consequently, the cytological breakpoints of

(Christensen and Cook, 2007.3.22)

Df(2R)BSC269 are predicted to be 44E3;44F3.

(Christensen and Cook, 2007.3.22)

Sequence Crossreferences

DDBJ / EMBL / GenBank

DNA sequence

Protein sequence

Gene Deletion and Duplication Data

Genes Deleted / Disrupted

Complementation Data

Completely deleted / disrupted

blo

(Kahsai and Cook, 2018)

DCTN2-p50

(Christensen and Cook, 2007.3.22)

RyR

(Kahsai and Cook, 2018, Kahsai et al., 2016)

sns

(Kahsai and Cook, 2018)

stmA

(Kahsai and Cook, 2018, Christensen and Cook, 2007.3.22)

Partially deleted / disrupted

Molecular Data

Completely deleted

DCTN2-p50

(Christensen and Cook, 2007.3.22)

stmA

(Christensen and Cook, 2007.3.22)

Partially deleted

Genes NOT Deleted / Disrupted

Complementation Data

lin

(Wen et al., 2024)

Molecular Data

Genes Duplicated

Complementation Data

Completely duplicated

Partially duplicated

Molecular Data

Completely duplicated

Partially duplicated

Genes NOT Duplicated

Complementation Data

Molecular Data

Affected Genes Inferred by Location (18)

Related Comments

Phenotypic Data

In combination with other aberrations

NOT in combination with other aberrations

Stocks (1)

Bloomington

23165

w¹¹¹⁸; Df(2R)BSC269/CyO

Notes on Origin

Discoverer

Balancer / Genotype Variants of the Aberration

Separable Components

Other Comments

The presence of P+PBac{XP5.RB3}BSC269 was verified using the PCR methods and primers described in FBrf0175003.

(Christensen and Cook, 2007.3.22)

Synonyms and Secondary IDs (3)

Reported As

Symbol Synonym

Df(2R)BSC269

(Wen et al., 2024, Huang et al., 2020, Kahsai and Cook, 2018, Lee et al., 2018, Douris et al., 2017, Kahsai et al., 2016, Cook et al., 2012, FlyBase Curators, 2008, Christensen and Cook, 2007.3.22, FlyBase, 2007)

DfBSC269

(Kreko-Pierce et al., 2016)

RyR^Df

(Kreko-Pierce et al., 2016)

Name Synonyms

Secondary FlyBase IDs

References (13)

Report Sections

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