FlyBase Aberration Report: Dmel\Df(2L)BSC354

General Information

Symbol

Df(2L)BSC354

Species

D. melanogaster

Name

FlyBase ID

FBab0045141

Feature type

chromosomal_deletion

Also Known As

eya^Df, BSC354

Computed Breakpoints include

[26D7-26D7];[26E3-26E3];

Features within 26D7--26E3

Genomic Maps

JBrowse

Sequence coordinates

2L:6,465,706..6,465,706 (Df(2L)BSC354:bk1)

(Bloomington Drosophila Stock Center, 2008.8.7)

2L:6,557,463..6,557,463 (Df(2L)BSC354:bk2)

(Bloomington Drosophila Stock Center, 2008.8.7)

Member of large scale dataset(s)

Dfs_BSC_set2

A set of ~800 largely isogenic deficiency stocks created by FLP-induced recombination between FRT-carrying transgenic insertions; molecularly defined deletion endpoints correspond to initial location of the progenitor insertions. Designed to fill gaps in deletion coverage and breakpoint placement; also used to replace older available deficiencies that have not been molecularly mapped.

(Cook et al., 2012)

Nature of Aberration

Cytological Order

Progenitor

P{XP}d11570

(Christensen et al., 2007.10.29)

PBac{WH}f07568

(Christensen et al., 2007.10.29)

Mutagen

FLPase

(Christensen et al., 2007.10.29)

Class of aberration (relative to wild type)

chromosomal_deletion

(FlyBase, 2007)

Class of aberration (relative to progenitor)

chromosomal_deletion

(Christensen et al., 2007.10.29)

Breakpoints

26D7;26E3

(FlyBase Curators, 2008)

Causes alleles

Carries alleles

Transposon Insertions

P+PBac{XP5.WH5}BSC354

(Christensen et al., 2007.10.29)

Formalized genetic data

Genetic mapping information

Comments

Breakpoint from FlyBase's release 5 sequence location of progenitor insertion.

(Bloomington Drosophila Stock Center, 2008.8.7)

Comments on Cytology

The cytological breakpoints of Df(2L)BSC354 predicted from the Release 5 genomic coordinates of the P{XP}d11570 and PBac{WH}f07568 transposable element insertions sites are 26D7;26E3.

(Christensen et al., 2007.10.29)

Sequence Crossreferences

DDBJ / EMBL / GenBank

DNA sequence

Protein sequence

Gene Deletion and Duplication Data

Genes Deleted / Disrupted

Complementation Data

Completely deleted / disrupted

eya

(Kahsai et al., 2016, Christensen et al., 2007.10.29)

l(2)k03201

(Kahsai et al., 2016)

Partially deleted / disrupted

Molecular Data

Completely deleted

Partially deleted

Genes NOT Deleted / Disrupted

Complementation Data

Molecular Data

Genes Duplicated

Complementation Data

Completely duplicated

Partially duplicated

Molecular Data

Completely duplicated

Partially duplicated

Genes NOT Duplicated

Complementation Data

Molecular Data

Affected Genes Inferred by Location (17)

Related Comments

Phenotypic Data

In combination with other aberrations

NOT in combination with other aberrations

Dominantly modifies the size of pupae relative to wild-type controls.

(Walker et al., 2013)

Stocks (1)

Bloomington

24378

w¹¹¹⁸; Df(2L)BSC354/CyO

Notes on Origin

Discoverer

Balancer / Genotype Variants of the Aberration

Separable Components

Other Comments

The presence of P+PBac{XP5.WH5}BSC354 was verified using the PCR methods and primers described in FBrf0175003.

(Christensen et al., 2007.10.29)

Synonyms and Secondary IDs (4)

Reported As

Symbol Synonym

BSC354

(Kim et al., 2023, Walker et al., 2013, Jusiak et al., 2012)

Df(2L)BSC354

(Candia et al., 2023, Pan et al., 2022, Li et al., 2020, Sawyer et al., 2020, Hao et al., 2019, Stratmann et al., 2019, Baker et al., 2018, Stratmann and Thor, 2017, Kahsai et al., 2016, Stratmann et al., 2016, de Taffin et al., 2015, Karandikar et al., 2014, Jin et al., 2013, Cook et al., 2012, FlyBase Curators, 2008, Christensen et al., 2007.10.29, FlyBase, 2007)

Df(eya)

(Karandikar et al., 2014)

eya^Df

(Stratmann et al., 2019, Stratmann and Thor, 2017, Stratmann et al., 2016)

Name Synonyms

Secondary FlyBase IDs

References (23)

Report Sections

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