FB2026_02 , released June 18, 2026
Human Disease Model Report: Fanconi anemia, complementation group L
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General Information
Name
Fanconi anemia, complementation group L
FlyBase ID
FBhh0000287
Disease Ontology Term
Parent Disease
Overview

This report describes Fanconi anemia, complementation group L (FANCL), which is a subtype of Fanconi anemia; FANCL exhibits autosomal recessive inheritance. The human gene implicated in this disease is FANCL, which encodes Fanconi anemia complementation group L, a ubiquitin ligase protein that mediates monoubiquitination of FANCD2 (MIM:613984), a key step in the DNA damage pathway. There is one high-scoring fly ortholog, Fancl, for which RNAi targeting constructs and an allele caused by insertional mutagenesis have been generated.

The human FANCL gene has not been introduced into flies.

Loss-of-function mutation or RNAi-effected reduction in expression of Dmel\Fancl results in hypersensitivity to cross-linking agents.

[updated Jul. 2017 by FlyBase; FBrf0222196]

Disease Summary Information
Parent Disease Summary: Fanconi anemia
Symptoms and phenotype

Fanconi anemia (FA) is characterized by physical abnormalities, bone marrow failure, and increased risk of malignancy. Physical abnormalities, present in 60%-75% of affected individuals, include one or more of the following: short stature; abnormal skin pigmentation; malformations of the thumbs, forearms, skeletal system, eyes, kidneys and urinary tract, ears (and decreased hearing), heart, gastrointestinal system, central nervous system; hypogonadism; and developmental delay. Progressive bone marrow failure with pancytopenia typically presents in the first decade, often initially with thrombocytopenia or leukopenia. By age 40 to 50 years, the estimated cumulative incidence of bone marrow failure is 90%; the incidence of hematologic malignancies (primarily acute myeloid leukemia) 10%-30%; and of nonhematologic malignancies (solid tumors, particularly of the head and neck, skin, GI tract, and genital tract) 25%-30%. [from GeneReviews, Fanconi Anemia, pubmed:20301575 2016.06.01]

Fanconi anemia is a clinically and genetically heterogeneous disorder that causes genomic instability. Characteristic clinical features include developmental abnormalities in major organ systems, early-onset bone marrow failure, and a high predisposition to cancer. The cellular hallmark of FA is hypersensitivity to DNA crosslinking agents and high frequency of chromosomal aberrations pointing to a defect in DNA repair (summary by Deakyne and Mazin, 2011, pubmed:21568838). [From MIM:227650, 2016.05.26]

Specific Disease Summary: Fanconi anemia, complementation group L
OMIM report

[FANCONI ANEMIA, COMPLEMENTATION GROUP L; FANCL](https://omim.org/entry/614083)

Human gene(s) implicated

[FANCL GENE; FANCL](https://omim.org/entry/608111)

Symptoms and phenotype

Fanconi anemia, complementation group L (FANCL) is a disorder affecting all bone marrow elements and resulting in anemia, leukopenia and thrombopenia. It is associated with cardiac, renal and limb malformations, dermal pigmentary changes, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage) and defective DNA repair. [From UniProt, uniprot:Q9NW38 2016.06.01]

FANCL has been reported in a male patient who had developmental delay, a cafe-au-lait spot, mild hypocellularity, and a family history of leukemia; in this patient, compound heterozygous mutation in the FANCL gene were identified (Ali et al., 2009, pubmed:19405097). FANCL has also been reported in two unrelated infants presenting as multiple congenital anomalies reminiscent of VACTERL (MIM:192350) or VACTERL-H (MIM:276950). The first patient, born of consanguineous Moroccan parents, was noted to have radial hypoplasia and intrauterine growth retardation on prenatal ultrasound at 14 weeks' gestation. Later investigations showed tetralogy of Fallot, left kidney agenesis, right kidney hydronephrosis, and esophageal atresia. After birth, the patient showed hypertelorism, broad nasal root and puffy cheeks, and bilateral absence of the thumbs. The infant died two months later and the abnormalities were confirmed by postmortem examination. Family history included two previous fetuses with congenital malformations; data available for one in which the pregnancy had been terminated revealed similar features. In the second family, a female Dutch infant showed intrauterine growth retardation, hydrocephalus, facial dysmorphism with depressed nasal tip, microtia, microphthalmia, cleft palate, short neck, short forearms, radial club hands with absent thumbs, hypoplastic sacrum, and anal atresia with rectovaginal fistula. She also had cardiac defects and renal hypoplasia. She died at age 2 days. Cells derived from both patients showed increased chromosomal breakage with diepoxybutane (DEB) or mitomycin C (MMC), consistent with a diagnosis of Fanconi anemia. A different homozygous truncating mutation in the FANCL gene was identified in each patient. (Vetro et al., 2015, pubmed:25754594).[From MIM:614083, 2016.06.01]

Genetics

Fanconi anemia of complementation group L (FANCL) is caused by homozygous or compound heterozygous mutation in the FANCL gene. [From MIM:614083, 2016.06.01]

Cellular phenotype and pathology
Molecular information

The FANCL gene encodes a ubiquitin ligase protein that mediates monoubiquitination of FANCD2 (MIM:613984), a key step in the DNA damage pathway. FANCL also mediates monoubiquitination of FANCI (MIM:611360). FANCL may stimulate the ubiquitin release from ubiquitin-conjugating enzyme 2W (UBE2W) (MIM:614277). It may be required for proper primordial germ cell proliferation in the embryonic stage, whereas it is probably not needed for spermatoonial proliferation after birth. [From UniProt, uniprot:Q9NW38 2016.06.01]

External links
Disease synonyms
FANCL
Fanconi anemia, complementation group L; FANCL
Fanconi anemia of complementation group L
Ortholog Information
Human gene(s) in FlyBase
    Human gene (HGNC)
    D. melanogaster ortholog (based on DIOPT)
    Comments on ortholog(s)

    One to one: 1 human to 1 Drosophila.

    Other mammalian ortholog(s) used
      D. melanogaster Gene Information (1)
      Gene Snapshot
      Fancl (Fancl) encodes a member of the Fanconi anemia pathway, which is a key mediator of DNA damage repair through homologous recombination. When mono-ubiquinated by the Fanconi core complex, it associates with the product of Fancd2 and localizes to sites of DNA damage. [Date last reviewed: 2018-11-15]
      Gene Groups / Pathways
      Comments on ortholog(s)

      Ortholog of human FANCL (1 Drosophila to 1 human).

      Dmel\Fancl shares 23% identity and 40% similarity with human FANCL.

      Orthologs and Alignments from DRSC
      DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
      Other Genes Used: Viral, Bacterial, Synthetic (0)
        Summary of Physical Interactions (2 groups)
        protein-protein
        Interacting group
        Assay
        References
        pull down, western blot
        pull down, western blot
        Alleles Reported to Model Human Disease (Disease Ontology) (2 alleles)
        Models Based on Experimental Evidence ( 1 )
        Allele
        Disease
        Evidence
        References
        Modifiers Based on Experimental Evidence ( 1 )
        Allele
        Disease
        Interaction
        References
        Alleles Representing Disease-Implicated Variants
        Genetic Tools, Stocks and Reagents
        Sources of Stocks
        Contact lab of origin for a reagent not available from a public stock center.
        Bloomington Stock Center Disease Page
        Related mammalian, viral, bacterial, or synthetic transgenes
        Allele
        Transgene
        Publicly Available Stocks
        Selected Drosophila transgenes
        Allele
        Transgene
        Publicly Available Stocks
        RNAi constructs available
        Allele
        Transgene
        Publicly Available Stocks
        Selected Drosophila classical alleles
        Allele
        Allele class
        Mutagen
        Publicly Available Stocks
        References (7)