FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Human Disease Model Report: type IV collagenopathies
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General Information
Name
type IV collagenopathies
FlyBase ID
FBhh0001009
Disease Ontology Term
Parent Disease
OMIM
Overview

Type IV collagen is a network-forming collagen found primarily in the basal lamina and constitutes a major structural component of basement membranes. There are six genes in human encoding alpha subunits of type IV collagen (COL4A1 though COL4A6); there are two in Drosophila, Dmel\Col4a1 and Dmel\vkg. As might be expected, defects affecting basement membranes have widespread effects. The six human genes are associated with an array of diseases, including angiopathies, kidney disease, and deafness, as well as syndromes with combinations of disease phenotypes. Using Dmel\Col4a1, two aspects of type IV collagenopathy have been investigated in flies: myopathy and kidney disease. Loss-of-function alleles, dominant temperature-sensitive alleles, RNAi targeting constructs, alleles caused by insertional mutagenesis, and amorphic alleles created by targeted recombination have been generated for Col4a1.

None of the human collagen type IV alpha genes has been introduced into flies.

Animals homozygous for amorphic mutations of Dmel\Col4a1 typically die during the embryonic stage. Dominant temperature-sensitive alleles have been used to characterize phenotypes relevant to human type IV collagenopathies. Muscle phenotypes have been characterized in myofibers of the oviduct: muscle fibers are observed to detach laterally from each other with focal splitting of the basement membrane; the basement membrane surrounding the myofibers appeared distorted, thinned, or absent. Phenotypes of Malpighian tubules, which perform many of the functions of the human kidney, indicate that Col4a1 mutations result in mitochondrial and other defects in tubule epithelial cells, which leads to impaired secretory function of the Malpighian tubules. Aberrant posttranslational protein modifications may play a role in tubule epithelial degeneration, driven by higher levels of peroxynitrite observed in mutant animals. Physical and genetic interactions have been described for Dmel\Col4a1; see below and in the Col4a1 gene report.

[updated Apr. 2019 by FlyBase; FBrf0222196]

Disease Summary Information
Disease Summary: type IV collagenopathies
OMIM report
Human gene(s) implicated
Symptoms and phenotype

See detailed descriptions in Jobling et al., 2014 (pubmed:24338780).

The 6 human type IV collagen genes associated with an array of diseases, including angiopathies, kidney disease, and deafness, as well as syndromes with combinations of disease phenotypes. [MIM:120130, MIM:120090, MIM:303631, MIM:303630, MIM:120070, MIM:120131]

Genetics

Although most of the diseases associated with type IV collagen genes exhibit dominant inheritance, recessive inheritance is also observed. [MIM:120130, MIM:120090, MIM:303631, MIM:303630, MIM:120070, MIM:120131]

Cellular phenotype and pathology
Molecular information

Type IV collagen is a non-fibrillar collagen, comprising three heterotrimers formed from alpha-chain polypeptides which are the products of six different genes. Unlike fibrillar collagen, type IV collagen molecules connect to form a latticework held together with S-hydroxylysyl methionine bonds, lysyl-derived crosslinks and hydroxylysine-linked disaccharides. This lattice is a major structural component of basement membranes underlying epithelia throughout the body, including the glomeruli, mesangial matrix, and vascular basement membranes (Jobling et al., 2014; pubmed:24338780).

External links
    Disease synonyms
    collagen disease
    collagen type IV myopathy
    collagen type IV nephropathy
    Ortholog Information
    Human gene(s) in FlyBase
      Other mammalian ortholog(s) used
        D. melanogaster Gene Information (1)
        Gene Snapshot
        Collagen type IV alpha 1 (Col4a1) encodes a subunit of Collagen IV and a major component of basement membranes. It is required for muscle and epithelium integrity. [Date last reviewed: 2019-03-07]
        Gene Groups / Pathways
        Comments on ortholog(s)

        Low- to moderate-scoring ortholog of human COL4A1, COL4A2, COL4A6, COL4A5, COL4A3, COL4A4 (2 Drosophila to 6 human). Dmel\Col4a1 shares 43-46% identity and 51-54% similarity with the human genes. (The second orthologous gene in fly is Dmel\vkg.)

        Orthologs and Alignments from DRSC
        DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
        Other Genes Used: Viral, Bacterial, Synthetic (0)
          Summary of Physical Interactions (8 groups)
          protein-protein
          Interacting group
          Assay
          References
          comigration in non denaturing gel electrophoresis, molecular weight estimation by staining
          experimental knowledge based
          experimental knowledge based
          experimental knowledge based
          coimmunoprecipitation, western blot
          experimental knowledge based
          x-ray crystallography, pull down, molecular sieving, experimental knowledge based, molecular weight estimation by staining, Identification by mass spectrometry
          RNA-protein
          Interacting group
          Assay
          References
          nucleic acid uv cross-linking assay, autoradiography
          Alleles Reported to Model Human Disease (Disease Ontology) (9 alleles)
          Alleles Representing Disease-Implicated Variants
          Genetic Tools, Stocks and Reagents
          Sources of Stocks
          Contact lab of origin for a reagent not available from a public stock center.
          Bloomington Stock Center Disease Page
          Related mammalian, viral, bacterial, or synthetic transgenes
          Allele
          Transgene
          Publicly Available Stocks
          Selected Drosophila transgenes
          Allele
          Transgene
          Publicly Available Stocks
          RNAi constructs available
          Allele
          Transgene
          Publicly Available Stocks
          Selected Drosophila classical alleles
          Allele
          Allele class
          Mutagen
          Publicly Available Stocks
          ethyl methanesulfonate
          ethyl methanesulfonate
          References (8)