FB2026_03 , released September 17, 2026
Human Disease Model Report: NSD1 duplication syndrome
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General Information
Name
NSD1 duplication syndrome
FlyBase ID
FBhh0001298
Disease Ontology Term
Parent Disease
OMIM
Overview

This report describes NSD1 duplication syndrome; a key aspect of this syndrome is reduced growth phenotypes. In contrast, deletions or severe loss-of-function mutations of NSD1 are implicated in an overgrowth syndrome (Soros syndrome 1; MIM:117550). NSD1 encodes a histone methyltransferase that dimethylates Lys36 of histone H3; it acts as a transcriptional regulator. There is a single orthologous gene in Drosophila, NSD, for which multiple genetic reagents have been generated, including RNAi-targeting constructs, overexpression constructs, and a targeted CRISPR knockout construct. Dmel\NSD is also orthologous to human NSD2 and NSD3.

The human NSD1 gene has not been introduced into flies.

Ubiquitous overexpression of Dmel\NSD during early development (using maternal drivers) results in developmental delay and reduced body size at the larval stage, resulting in pupal lethality. NSD overexpression in this system has been shown to enhance the transcription of pro-apoptotic genes and to activate caspases. In the brain, wild-type expression of NSD is restricted to a subset of glial cells. A small number of physical interactions have been described for Dmel\NSD; see below and in the NSD gene report.

[updated Jan. 2021 by FlyBase; FBrf0222196]

Disease Summary Information
Disease Summary: NSD1 duplication syndrome
OMIM report
Human gene(s) implicated
Symptoms and phenotype

Microduplications of the Sotos syndrome region containing NSD1 on 5q35 have been proposed to cause a syndrome of microcephaly, short stature and developmental delay (Rosenfeld et al., 2013; pubmed:23599694).

Genetics

Characterization of overlapping duplications suggests that whole-gene duplication of NSD1 in and of itself may be sufficient to cause the observed abnormal growth parameters (Rosenfeld et al., 2013; pubmed:23599694).

Cellular phenotype and pathology
Molecular information

NSD1 encodes a histone methyltransferase that dimethylates Lys-36 of histone H3 (H3K36me2) and acts as a transcriptional intermediary factor capable of both negatively or positively influencing transcription, depending on the cellular context. [Gene Cards, NSD1; 2021.01.06]

External links
Disease synonyms
5q35 duplication
Ortholog Information
Human gene(s) in FlyBase
    Human gene (HGNC)
    D. melanogaster ortholog (based on DIOPT)
    Comments on ortholog(s)

    Many to one: 3 human genes to 1 Drosophila gene.

    Other mammalian ortholog(s) used
      D. melanogaster Gene Information (1)
      Gene Groups / Pathways
      Comments on ortholog(s)

      Moderate- to high-scoring ortholog of human NSD3, NSD2, and NSD1 (1 Drosophila to 3 human). Dmel\NSD shares 25-27% identity and 40-42% similarity with the human genes. NSD1 encodes a significantly larger protein, with additional amino-terminal residues.

      Orthologs and Alignments from DRSC
      DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
      Other Genes Used: Viral, Bacterial, Synthetic (0)
        Summary of Physical Interactions (2 groups)
        protein-protein
        Interacting group
        Assay
        References
        affinity chromatography technology, Identification by mass spectrometry, anti bait coimmunoprecipitation, western blot, two hybrid
        anti tag coimmunoprecipitation, peptide massfingerprinting
        Alleles Reported to Model Human Disease (Disease Ontology) (3 alleles)
        Models Based on Experimental Evidence ( 3 )
        Allele
        Disease
        Evidence
        References
        Modifiers Based on Experimental Evidence ( 2 )
        Allele
        Disease
        Interaction
        References
        model of  syndrome
        is ameliorated by Diap1UAS.cHa
        Alleles Representing Disease-Implicated Variants
        Genetic Tools, Stocks and Reagents
        Sources of Stocks
        Contact lab of origin for a reagent not available from a public stock center.
        Bloomington Stock Center Disease Page
        Related mammalian, viral, bacterial, or synthetic transgenes
        Allele
        Transgene
        Publicly Available Stocks
        Selected Drosophila transgenes
        Allele
        Transgene
        Publicly Available Stocks
        RNAi constructs available
        Allele
        Transgene
        Publicly Available Stocks
        Selected Drosophila classical alleles
        Allele
        Allele class
        Mutagen
        Publicly Available Stocks
        CRISPR/Cas9
        References (6)