FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Human Disease Model Report: Seckel syndrome 9
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General Information
Name
Seckel syndrome 9
FlyBase ID
FBhh0001455
Disease Ontology Term
Parent Disease
Overview

This report describes Seckel syndrome 9 (SCKL9); SCKL9 exhibit autosomal recessive inheritance. The human gene implicated in this disease is TRAIP, which encodes an E3 ubiquitin ligase required to protect genome stability in response to replication stress, acting as a key regulator of interstrand cross-link repair. One of the key phenotypes of Seckel syndrome is microcephaly; it has been observed that most microcephaly disorders are linked to mutations in genes with centrosome and mitotic spindle functions or with DNA damage repair. There is a single Drosophila gene orthologous to TRAIP, Dmel\nopo, for which a number of genetic reagents, including loss-of-function mutations, RNAi targeting constructs, and alleles caused by insertional mutagenesis, have been generated.

The human Hsap\TRAIP gene has been introduced into flies, but has not been characterized in the context of this disease model. Heterologous rescue (functional complementation) has been demonstrated for the Dmel\nopo female sterility phenotype.

Animals homozygous for an amorphic allele of Dmel\nopo survive to adulthood; females are sterile. The mushroom bodies of the adult brain are smaller and contain fewer neurons; no neurodegeneration is observed, which is consistent with human primary microcephaly. Reduced neuron numbers in the mushroom body in nopo mutant animals can be explained by premature loss of neuroblasts; many mushroom body neuronblasts are observed to have prominent chromosome bridges in anaphase, accompanied by polyploidy, aneuploidy, or micronuclei.

[updated Mar. 2024 by FlyBase; FBrf0222196]

Disease Summary Information
Disease Summary: Seckel syndrome 9
OMIM report

[SECKEL SYNDROME 9; SCKL9](https://omim.org/entry/616777)

Human gene(s) implicated

[TRAF-INTERACTING PROTEIN; TRAIP](https://omim.org/entry/605958)

Symptoms and phenotype

Seckel syndrome is a rare autosomal recessive disorder characterized by intrauterine growth retardation, dwarfism, microcephaly with mental retardation, and a characteristic 'bird-headed' facial appearance (Shanske et al., 1997). [from MIM:210600; 2022.04.19]

Genetics

Seckel syndrome 9 (SCKL9) is caused by homozygous mutation in the TRAIP gene. [from MIM:616777; 2022.04.19]

Cellular phenotype and pathology
Molecular information

TRAIP encodes an E3 ubiquitin ligase required to protect genome stability in response to replication stress, acting as a key regulator of interstrand cross-link repair. [Gene Cards, TRAIP; 2022.04.19]

External links
Disease synonyms
microcephaly disorder
SCKL9
Ortholog Information
Human gene(s) in FlyBase
Human gene (HGNC)
D. melanogaster ortholog (based on DIOPT)
Comments on ortholog(s)

One to one: 1 human gene to 1 Drosophila gene.

Other mammalian ortholog(s) used
    D. melanogaster Gene Information (1)
    Gene Snapshot
    no poles (nopo) encodes a RING domain-containing E3 ubiquitin ligase that is essential for early embryogenesis. It positively regulates caspase-dependent cell death. [Date last reviewed: 2019-03-14]
    Cellular component (GO)
    Gene Groups / Pathways
    Comments on ortholog(s)

    Moderate- to high-scoring ortholog of human TRAIP (1 Drosophila to 1 human).

    Orthologs and Alignments from DRSC
    DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
    Other Genes Used: Viral, Bacterial, Synthetic (0)
      Summary of Physical Interactions (5 groups)
      protein-protein
      Interacting group
      Assay
      References
      two hybrid, anti tag coimmunoprecipitation, anti tag western blot
      Alleles Reported to Model Human Disease (Disease Ontology) (9 alleles)
      Alleles Representing Disease-Implicated Variants
      Genetic Tools, Stocks and Reagents
      Sources of Stocks
      Contact lab of origin for a reagent not available from a public stock center.
      Bloomington Stock Center Disease Page
      Related mammalian, viral, bacterial, or synthetic transgenes
      Allele
      Transgene
      Publicly Available Stocks
      Selected Drosophila transgenes
      Allele
      Transgene
      Publicly Available Stocks
      RNAi constructs available
      Allele
      Transgene
      Publicly Available Stocks
      Selected Drosophila classical alleles
      Allele
      Allele class
      Mutagen
      Publicly Available Stocks
      amorphic allele - molecular evidence
      CRISPR/Cas9
      loss of function allele
      ethyl methanesulfonate
      References (4)