FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Human Disease Model Report: neurodevelopmental disorder, PRPF19-related
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General Information
Name
neurodevelopmental disorder, PRPF19-related
FlyBase ID
FBhh0001554
Disease Ontology Term
Parent Disease
OMIM
Overview

This report describes neurodevelopmental disorder, PRPF19-related, an autosomal dominant intellectual developmental disorder that has been associated with de novo missense mutations. The human gene implicated is PRPF19, which encodes pre-mRNA processing factor 19, a component of the Prp19 complex and U2-type catalytic step 2 spliceosome, which is involved in pre-mRNA splicing. There is one high-scoring fly ortholog, Dmel\Prp19, for which multiple genetic reagents, including classical alleles, RNAi-targeting constructs, and alleles caused by insertional mutagenesis, have been generated.

Multiple UAS constructs of the human Hsap\PRPF19 gene, including wild-type Hsap\PRPF19 and genes carrying mutational lesions, have been introduced into flies. See the 'Disease-Implicated Variants' table below. Partial heterologous rescue (functional complementation) has been demonstrated for the lethality and mushroom body phenotypes observed for pan-neuronal knockdown of Dmel\Prp19.

Pan-neuronal RNAi-mediated knockdown of Dmel\Prp19 is lethal prior to eclosion, and results in a generalized reduction in brain cell proliferation, with structural morphology defects of the larval mushroom body. Affected larvae exhibit hypoactivity in crawling behavior. Overexpression of wild-type or missense variant Hsap\PRPF19, but not a variant resulting in a truncated protein, fully rescue the survival rate and partially rescue mushroom body defects. Female adults in which pan-neuronal knockdown of Dmel\Prp19 was rescued with Hsap\PRPF19 missense variants exhibit changes in social space behavior, clustering closer to neighboring flies than do wild-type flies, which disperse throughout available space (FBrf0258439).

[updated Mar. 2024 by FlyBase; FBrf0222196]

Disease Summary Information
Disease Summary: neurodevelopmental disorder, PRPF19-related
OMIM report
Human gene(s) implicated
Symptoms and phenotype

A cohort of 6 unrelated individuals exhibit a neurodevelopmental phenotype associated with PRPF19 de novo missense variants, with core features of global developmental, speech, and motor delays, mild-to-severe ID, hypotonia, and autistic features. These core features are shared with disorders resulting from missense mutations in other genes involved in pre-mRNA splicing, including U2AF2 and RBFOX1 (Li, et al., 2024 pubmed:37962958; FBrf0258439).

Genetics

Newly identified mutations in PRPF19 are mostly de novo missense variants (Li, et al., 2024 pubmed:37962958; FBrf0258439).

Cellular phenotype and pathology
Molecular information

PRPF19 enables identical protein binding activity and ubiquitin-ubiquitin ligase activity. Involved in several processes, including DNA damage checkpoint signaling; cellular protein metabolic process; and mRNA splicing, via spliceosome. Acts upstream of or within protein polyubiquitination. Located in cytoplasm; nuclear speck; and site of double-strand break. Part of Prp19 complex and U2-type catalytic step 2 spliceosome. Colocalizes with DNA replication factor A complex. [provided by Alliance of Genome Resources, Apr 2022]

External links
Disease synonyms
Ortholog Information
Human gene(s) in FlyBase
Human gene (HGNC)
D. melanogaster ortholog (based on DIOPT)
Comments on ortholog(s)

One to one (1 human to 1 Drosophila); PRPF19 has one high-scoring Drosophila ortholog, Prp19.

Other mammalian ortholog(s) used
    D. melanogaster Gene Information (1)
    Gene Snapshot
    Pre-RNA processing factor 19 (Prp19) encodes a protein involved in chromatin organization and alternative mRNA splicing regulation. [Date last reviewed: 2019-07-11]
    Gene Groups / Pathways
    Comments on ortholog(s)

    High-scoring ortholog of human PRPF19.

    Orthologs and Alignments from DRSC
    DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
    Other Genes Used: Viral, Bacterial, Synthetic (0)
      Summary of Physical Interactions (19 groups)
      protein-protein
      Interacting group
      Assay
      References
      anti tag coimmunoprecipitation, peptide massfingerprinting
      anti tag coimmunoprecipitation, peptide massfingerprinting
      anti bait coimmunoprecipitation, western blot, anti tag coimmunoprecipitation, peptide massfingerprinting
      anti bait coimmunoprecipitation, western blot, anti tag coimmunoprecipitation, peptide massfingerprinting
      anti tag coimmunoprecipitation, peptide massfingerprinting
      anti bait coimmunoprecipitation, western blot, anti tag coimmunoprecipitation, peptide massfingerprinting
      anti tag coimmunoprecipitation, Identification by mass spectrometry
      anti tag coimmunoprecipitation, peptide massfingerprinting
      anti tag coimmunoprecipitation, Identification by mass spectrometry
      anti tag coimmunoprecipitation, Identification by mass spectrometry
      anti tag coimmunoprecipitation, Identification by mass spectrometry
      anti tag coimmunoprecipitation, peptide massfingerprinting
      anti tag coimmunoprecipitation, Identification by mass spectrometry
      anti tag coimmunoprecipitation, Identification by mass spectrometry
      anti tag coimmunoprecipitation, western blot, peptide massfingerprinting
      anti tag coimmunoprecipitation, Identification by mass spectrometry
      anti tag coimmunoprecipitation, peptide massfingerprinting
      anti tag coimmunoprecipitation, Identification by mass spectrometry
      anti bait coimmunoprecipitation, western blot
      Alleles Reported to Model Human Disease (Disease Ontology) (6 alleles)
      Models Based on Experimental Evidence ( 1 )
      Allele
      Disease
      Evidence
      References
      Modifiers Based on Experimental Evidence ( 2 )
      Models Based on Experimental Evidence ( 3 )
      Modifiers Based on Experimental Evidence ( 0 )
      Allele
      Disease
      Interaction
      References
      Alleles Representing Disease-Implicated Variants
      Genetic Tools, Stocks and Reagents
      Sources of Stocks
      Contact lab of origin for a reagent not available from a public stock center.
      Bloomington Stock Center Disease Page
      Related mammalian, viral, bacterial, or synthetic transgenes
      Allele
      Transgene
      Publicly Available Stocks
      Selected Drosophila transgenes
      Allele
      Transgene
      Publicly Available Stocks
      RNAi constructs available
      Allele
      Transgene
      Publicly Available Stocks
      Selected Drosophila classical alleles
      Allele
      Allele class
      Mutagen
      Publicly Available Stocks
      References (4)