FB2026_02 , released June 18, 2026
Physical Interaction report
Open Close
General Information
Interaction Type
Interacting Genes
FlyBase ID
FBig0000103895
Interaction Network
Interactions Browser links
krimp network
AGO3 network
Reported Interactions
FBrf0229343-1.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Krimp

bait
AGO3 

AGO3

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

AGO3 in krimp complexes is mostly devoid of sDMA modification and not loaded with piRNAs.

Source was ovaries of Oregon-R fly line; bait produced from endogenous gene; prey produced from endogenous gene.

FBrf0229343-2.PD.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
AGO3 

AGO3

bait

GST tag

Krimp

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Tud domain
sufficient binding region
aa 551-746
Tud domain
necessary binding region
aa 551-746
possible Tud domain
sufficient binding region
aa 1-551

Weak interaction with AGO3.

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced as a recombinant fusion protein in bacterial system; prey produced as a protein in bacterial system.

AGO3 in krimp complexes did not undergo sDMA modification.

FBrf0229343-3.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Krimp

bait
AGO3 

AGO3

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Experiments performed in csul mutant fly background.

AGO3 in krimp complexes did not undergo sDMA modification.

Source was ovaries of csul mutant fly line; bait produced from endogenous gene; prey produced from endogenous gene.

FBrf0229343-4.PD.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
AGO3 

AGO3

bait
AGO3 
AGO3 

Krimp

prey

GST tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
AGO3 
sDMA domain
sufficient binding region
aa 1-110
AGO3 
sDMA domain
necessary binding region
aa 1-110
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced as a recombinant fusion protein in bacterial system; prey produced as a protein in bacterial system.

krimp was pulled-down by non-sDMA-modified AGO3 and not sDMA-modified AGO3.

FBrf0229343-5.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
AGO3 

AGO3

bait

Krimp

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

krimp in ovary lysate interacts with both sDMA-modified AGO3 and non-sDMA-modified AGO3.

Source was ovaries of Oregon-R fly line; bait produced from endogenous gene; prey produced from endogenous gene.

FBrf0229344-2.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Krimp

bait

FLAG tag

AGO3 

Ago3

prey

GFP tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was ovaries of transgenic fly line; bait produced from tagged transgenic construct; prey produced from tagged transgenic construct.

Interaction occurs with wild-type AGO3, arginine-methylation-deficient AGO3 and piRNA-binding-deficient AGO3.

FBrf0229344-3.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
AGO3 

Ago3

bait

FLAG tag

Krimp

prey

GFP tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Tud 1 domain
sufficient binding region
aa 311-489
Tud 2 domain
sufficient binding region
aa 490-746
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was cell extract of S2 cell line; bait produced from tagged transfected construct; prey produced from tagged transfected construct.

Either krimp Tud 1 domain or Tud 2 domain is sufficient for the interaction.

FBrf0229344-4.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Krimp

bait

FLAG tag

AGO3 

Ago3

prey

GFP tag

AGO3 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
AGO3 
N-termminal fragment
sufficient binding region
aa 1-296
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was cell extract of S2 cell line; bait produced from tagged transfected construct; prey produced from tagged transfected construct.

FBrf0249362-2.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Krimp

bait

GFP tag

AGO3 

Ago3

prey

FLAG tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
interaction domain
sufficient binding region
aa 301-746

coordinates relative to krimp-PA

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was cell extract of S2 cell line; bait produced from transfected construct; prey produced from transfected construct.

Step two in a two step sequential IP from S2 cells expressing aub, krimp and AGO3. Step one was anti-FLAG(aub) immunoprecipitation. This immunoprecipitate was then subsequently immunoprecipitated with anti-GFP(krimp). The presence of AGO3 in the final precipitate suggests that one molecule of krimp binds aub and AGO3.

FBrf0249362-3.ITC
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Krimp

bait
AGO3 

Ago3

prey
AGO3 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
eTud1 domain
sufficient binding region
aa 272-512

coordinates relative to krimp-PA

AGO3 
interaction domain
sufficient binding region
aa 63-78
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Kd = 62.8uM. Methylated AGO3 peptides did not bind to the krimp eTud1 domain.

Interaction in vitro; bait produced as a recombinant fusion protein in bacterial system; prey peptide source unspecified.

FBrf0249362-7.XC
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Krimp

neutral component

Krimp

neutral component

Krimp

neutral component
AGO3 
AGO3 

Ago3

neutral component
AGO3 

Ago3

neutral component
AGO3 
AGO3 

Ago3

neutral component
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
eTud1 domain
sufficient binding region
aa 272-512

coordinates relative to krimp-PA

AGO3 
interaction domain
sufficient binding region
aa 63-78
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; krimp produced as a recombinant fusion protein in bacterial system; aub peptide source unspecified.

External Crossreferences and Linkouts ( 1 )
Linkouts
MIST - An integrated Molecular Interaction Database
References (3)