FB2026_02 , released June 18, 2026
Transcript: Dmel\nAChRα4-RE
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General Information
Symbol
Dmel\nAChRα4-RE
Species
D. melanogaster
Annotation Symbol
CG12414-RE
FlyBase ID
FBtr0308331
Feature type
Associated gene
Evidence Rank
Length (nt)
1509
Evidence Score
Genomic Location
Genomic Maps
cDNA Clones Consistent with the Transcript ( 44 )
cDNA Clones, Fully Sequenced
Exact Match
    Contained within the annotated transcript, internally consistent
      End(s) extend beyond the annotated transcript, internally consistent
      cDNA Clones, End Sequence Only (ESTs)
      Sequence
      CCCTACTCTACTGAATACTCTAATGACAATTAATCCAATACAAAGTTATTTATAAAATACATCATGTGATATTATGTACA
      TAGATTCGGCTTATAATGTTGATCTGAGGCACATGGATGAACAACAGGGCAGCAACGTTGTTGCTGTGGGTGTGGACCTA
      TCTGAATTTTATATGTCTGTGGAATGGGACATTCTCGAAGTTCCAGCTGTTAGGAATGAAAAGTTTTATACTTGTTGCGA
      CGAACCATACTTGGACATCACATTTAATATAACAATGAGAAGGAAGACGCTTTTTTATACTGTTAATATAATAATACCGT
      GCATGGGAATATCATTTTTAACTGTATTAACATTTTACCTTCCATCGGATAGTGGAGAAAAGGTCACACTATCTATCTCC
      ATTCTTATTAGTCTTCACGTGTTCTTTCTTTTGGTGGTTGAAATTATACCACCAACGTCATTGGTTGTTCCTTTGCTGGG
      AAAATACCTAATATTTGCCATGATACTTGTGTCTATCAGTATCTGCGTGACGGTTGTTGTTTTGAACGTTCATTTTCGTT
      CACCTCAAACTCATAAAATGGCACCCTGGGTTAAGCGCGTCTTTATTGACTTTTTGCCAGCGTTTTTATTCATTAAAAGG
      CCGACGTACAACTTTGAAACGAGTAAATTACTTTTAAAGGACACACATGCTTGCTTTTATCCTTATTATTCTGCAACAAA
      TATCGATCGACTCGTGTCTTCAGGATACAACAATAGTCTGCCAAAAGAAGATTTATCGCAAAGCATTACGGCGAATGGAC
      CATTTGGAGGAAGTTGTCAGGTTCATGGCCCAGTGCCGCCACTCACCCATTGTAGTTCAGACGAAATAGCCGCCGTCCCC
      GATATGGATATCGGACCCTTAGGGATGAAAAGTCCCATTTTAAATAATCCAGCATTTTCCCACTCTAAATGCCTTCCTAA
      AATTCACAAAAGCTGTTTTTGTGTGCGCTTTATTGCAGAGCATACAAAAATGCAAGAGGACTCAACTAAAGTTAAAGAGG
      ATTGGAAATACGTTGCTATGGTATTGGATAGACTTTTTTTGTGGATATTCACGTTGGCAGTTGTGGTTGGGACCGCCGGA
      ATAATTTTACAAGCTCCTACGTTATATGACGACCGCATCCCGATTATTGAGCAAAAGGATTTGGACTTTTCAGGAACATC
      AGCCGGTCGCTGTAGACCTCCACAATAACATTATTATATTAAAAGAATTTAATTTTAAACTGAGGTGTATCAGATTATTA
      TTACAAAATGAACTTTAACTAATATTTTCTGCAGGAAAAAATGTTAAAAATTACATATGTGTGTATTGAAGGCTTTAAGT
      AACAAATTACCTATTTTTTATTTTTGACCACATTTAGATATTCCAAAGTAATTTGGTATTCTTAGGCACTTCAAACCACG
      ACATTTTTTTTATTTATCCTTGTCAACGAACTTAAAGAATAAAATTTTAACATTTTAATCTTAAACCAG
      
      Other Products of this Gene
      Other Transcripts
      Name
      FlyBase ID
      Length (nt)
      FBtr0300118
      5645
      FBtr0308330
      5464
      FBtr0308332
      2354
      FBtr0332872
      2281
      FBtr0346707
      5645
      Polypeptides
      Derived from THIS transcript
      Name
      FlyBase ID
      Length (aa)
      FBpp0300650
      384
      Derived from OTHER transcripts
      Name
      FlyBase ID
      Length (aa)
      FBpp0289395
      539
      FBpp0300649
      371
      FBpp0300651
      371
      FBpp0305094
      499
      FBpp0312320
      539
      Comments

      Based on cDNA(s) that contain premature stop codon and/or downstream start; may or may not produce functional polypeptide.

      Unconventional splice site postulated (GA-AG); supported by multiple cDNAs, RNA-seq data, and conservation across close Drosophila species.

      Transcript terminates at site supported by polyadenylated cDNA.

      Transcript postulated to overlap transposable element: TSS within annotated TE; this isoform may be specific to sequenced strain.

      transcript_exception: non_canonical_splice_site

      External Crossreferences and Linkouts ( 1 )
      Crossreferences
      RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
      Synonyms and Secondary IDs (2)
      Reported As
      Symbol Synonym
      nAChRα4-RE
      nAcRα-80B-RE
      Secondary FlyBase IDs
        References (0)