FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Allele: Dmel\tra4
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General Information
Symbol
Dmel\tra4
Species
D. melanogaster
Name
FlyBase ID
FBal0017007
Feature type
allele
Associated gene
Associated Insertion(s)
Carried in Construct
Also Known As
trav1
Key Links
Genomic Maps

Nature of the Allele
Progenitor genotype
Cytology

not detectably rearranged.

Polytene chromosomes normal.

Description

Nonsense mutation at amino acid 13 (J. Belote, personal communication).

Amino acid replacement: R13term.

Nucleotide substitution: C?T.

Mutations Mapped to the Genome
Curation Data
Type
Location
Additional Notes
References
Nucleotide change:

C16591007T

Reported nucleotide change:

C?T

Amino acid change:

R13term | tra-PA; R13term | tra-PB

Reported amino acid change:

R13term

Variant Molecular Consequences
Associated Sequence Data
DNA sequence
Protein sequence
 
Expression Data
Reporter Expression
Additional Information
Statement
Reference
 
Marker for
Reflects expression of
Reporter construct used in assay
Human Disease Associations
Disease Ontology (DO) Annotations
Models Based on Experimental Evidence ( 0 )
Disease
Evidence
References
Modifiers Based on Experimental Evidence ( 0 )
Disease
Interaction
References
Comments on Models/Modifiers Based on Experimental Evidence ( 0 )
 
Disease-implicated variant(s)
 
Phenotypic Data
Phenotypic Class
Phenotype Manifest In
Detailed Description
Statement
Reference

XX tra1/tra4 animals develop as pseudomales. Three categories of gonad are seen. Approximately 50% of pseudomales have 'atrophic' gonads, which contain no differentiating germ cells (spectrosomes, fusomes and ring canals are not seen). The remainder of gonads contain germ cells which initiate gametogenic differentiation (spectrosomes and fusomes are seen). 19% of these gonads are 'non-oogenic', and in most of these cases the germ cells are connected by multibranched fusomes containing actin (a spermatogenic characteristic). The remaining 33% of gonads are 'oogenic'.

Less than half of XX tra1/tra4 mutant pseudomales produce gonads with the most severe group 1 pseudotestes phenotype. The remaining pseudomales have a less severe phenotype, with viable germ cells. otu10 and Df(1)otu-PΔ1 cause an increase in severity of this phenotype: over 70% of the resulting gonads were of group 1. An increase in otu activity in XX otuhs.PN, tra1/tra4 leads to elongated pseudotestes categorized as having a group 3 phenotype.

100% of XX and 86% of XY tra4/Df(3L)st-j7 flies show male-specific courtship when paired with mature virgin females.

Females exhibit segment spanning muscles in the fifth abdominal segment indicative of a transformation to the male specific phenotype. Somatic development of males is unaffected.

External Data
Interactions
Show genetic interaction network for Enhancers & Suppressors
Phenotypic Class
Phenotype Manifest In
Additional Comments
Genetic Interactions
Statement
Reference

XX tra1/tra4 pseudomales that are also homozygous for ovoD1rv23 show an increase in the frequency of atrophic gonads compared to XX tra1/tra4 pseudomales. Non-oogenic gonads, with spectrosomes and multibranched fusomes are also seen (at the same frequency as XX tra1/tra4 pseudomales). XX tra1/tra4 pseudomales that are also homozygous for Df(1)otu-PΔ1 show an increase in the frequency of atrophic gonads and a decrease in the frequency of oogenic gonads compared to XX tra1/tra4 pseudomales. Non-oogenic gonads, with spectrosomes and multibranched fusomes are seen at the same frequency as XX tra1/tra4 pseudomales. XX tra1/tra4 pseudomales that are also homozygous for Sxlf5 show a decrease in the frequency of oogenic gonads and an increase in the frequency of non-oogenic gonads compared to XX tra1/tra4 pseudomales. Atrophic gonads are seen at the same frequency as XX tra1/tra4 pseudomales. XX tra1/tra4 pseudomales that are also carrying otuhs.PN and raised at 20-25oC are 2 to 3 times longer than normal. Expression of otuhs.PN partially rescues XX tra1/tra4 pseudomales; 88% of the gonads are 'feminised' and show a developmental progression of gametogenic stages, which can be divided into three sections corresponding to germarial regions 1-3 in normal oogenesis. Section I includes the most apical portion of the pseudomale testis and contains gametogenic stages characteristic of germarial region 1 in ovaries. A group of cells containing spectrosomes is localised at the distal tip. Clusters of cells connected by branched fusomes are located immediately adjacent to the distal cells. The fusomes have disappeared in section II and differentiation of the ring canals continues. In section II, the pseudomale germ cells have differentiated to postgermarial stages. The germ cell clusters contain thick ring canals and the nuclei are large. Oogenic gonads are not seen in XX tra1/tra4 pseudomales carrying otuhs.PN that are also homozygous for ovoD1rv23 or Sxlf5. In each case the frequency of non-oogenic gonads is increased compared to XX tra1/tra4 pseudomales also homozygous for ovoD1rv23 or Sxlf5 respectively. Almost 90% of gonads are oogenic in newly eclosed XX tra1/tra4 pseudomales that are also carrying otu104.H. The level of feminisation is markedly reduced 7-10 days after eclosion. The feminisation of XX tra1/tra4 gonads by otu104.H is blocked if they are also carrying Df(1)otu-PΔ1.

Xenogenetic Interactions
Statement
Reference

Expression of Zzzz\trafl.Scer\UAS under the control of Scer\GAL4arm.PS in XX pseudomales homozygous for tra4 reduces the number of bristles forming the male sex comb structure in the foreleg basitarsus. In some cases, intersexual bristles are found between the sex comb-like bristles. In a very few cases, in which no sex comb-like bristles are found, the last transverse row is usually only partially rotated. Both male and female external terminalia are found. These comprise the female 8th tergite and vaginal plate structures, plus the male genital arch, lateral plates, claspers and penis apparatus. The anal plates are always intersexual. Increasing the dose of Zzzz\trafl.Scer\UAS leads to a reduction in the frequency of male structures, and a corresponding increase in the frequency of female structures - although complete female transformation is never observed.

Complementation and Rescue Data
Comments
Images (0)
Mutant
Wild-type
Stocks (0)
Notes on Origin
Discoverer

Hoffmann.

External Crossreferences and Linkouts ( 0 )
Synonyms and Secondary IDs (3)
References (12)