FB2026_02 , released June 18, 2026
Gene: Dmel\Spindly
Open Close
General Information
Symbol
Dmel\Spindly
Species
D. melanogaster
Name
Spindly
Annotation Symbol
CG15415
Feature Type
protein_coding_gene
FlyBase ID
FBgn0031549
Gene Model Status
Current
Stock Availability
6 publicly available
Gene Summary
Spindly (Spindly) encodes a key regulator of dynein recruitment to kinetochores and is involved in the spindle assembly checkpoint during the cell cycle. It also contributes to cell morphology and migration. [Date last reviewed: 2018-11-15] (FlyBase Gene Snapshot)
All Summaries
Key Links
Genomic Location
Cytogenetic map
24A1-24A1
Sequence location
Recombination map
2-10
RefSeq locus
NT_033779 REGION:3527387..3530317
Sequence
Get Decorated FASTA
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
NCBI
UCSC
Ensembl
PopFly
Function
Gene Ontology (GO) Annotations (4 terms)
Molecular Function (1 term)
Terms Based on Experimental Evidence (1 term)
CV Term
Evidence
References
enables protein phosphatase 1 binding
inferred from physical interaction with FLYBASE:flw; FB:FBgn0000711
(Bennett et al., 2006)
inferred from physical interaction with FLYBASE:Pp1-13C; FB:FBgn0003132
(Bennett et al., 2006)
inferred from physical interaction with FLYBASE:Pp1α-96A; FB:FBgn0003134
(Bennett et al., 2006)
inferred from physical interaction with FLYBASE:Pp1-87B; FB:FBgn0004103
(Bennett et al., 2006)
Terms Based on Predictions or Assertions (0 terms)
Biological Process (1 term)
Terms Based on Experimental Evidence (1 term)
CV Term
Evidence
References
involved_in regulation of mitotic metaphase/anaphase transition
inferred from mutant phenotype
(Griffis et al., 2007)
Terms Based on Predictions or Assertions (0 terms)
Cellular Component (2 terms)
Terms Based on Experimental Evidence (2 terms)
CV Term
Evidence
References
located_in kinetochore
inferred from direct assay
(Griffis et al., 2007)
located_in microtubule
inferred from direct assay
(Griffis et al., 2007)
Terms Based on Predictions or Assertions (0 terms)
Gene Group (FlyBase)
Protein Family (UniProt)
-
Protein Signatures (InterPro)
    -
    Summaries
    Gene Snapshot
    Spindly (Spindly) encodes a key regulator of dynein recruitment to kinetochores and is involved in the spindle assembly checkpoint during the cell cycle. It also contributes to cell morphology and migration. [Date last reviewed: 2018-11-15]
    Summary (Interactive Fly)

    spindle assembly checkpoint - regulator of mitotic dynein

    Gene Model and Products
    Number of Transcripts
    1
    Number of Unique Polypeptides
    1

    Please see the JBrowse view of Dmel\Spindly for information on other features

    To submit a correction to a gene model please use the Contact FlyBase form

    Protein Domains (via Pfam)
    Isoform displayed:
    Pfam protein domains
    InterPro name
    classification
    start
    end
    Protein Domains (via SMART)
    Isoform displayed:
    SMART protein domains
    InterPro name
    classification
    start
    end
    Structure
    Protein 3D structure   (Predicted by AlphaFold)   (AlphaFold entry Q9VQS4)

    If you don't see a structure in the viewer, refresh your browser.
    Model Confidence:
    • Very high (pLDDT > 90)
    • Confident (90 > pLDDT > 70)
    • Low (70 > pLDDT > 50)
    • Very low (pLDDT < 50)

    AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

    Experimentally Determined Structures
    Crossreferences
    Comments on Gene Model

    Gene model reviewed during 5.46

    Transcript Data
    Annotated Transcripts
    Name
    FlyBase ID
    RefSeq ID
    Length (nt)
    Assoc. CDS (aa)
    Spindly-RB
    FBtr0301590
    NM_134947
    2543
    781
    Additional Transcript Data and Comments
    Reported size (kB)
    Comments
    External Data
    Crossreferences
    Polypeptide Data
    Annotated Polypeptides
    Name
    FlyBase ID
    Predicted MW (kDa)
    Length (aa)
    Theoretical pI
    UniProt
    RefSeq ID
    GenBank
    Spindly-PB
    FBpp0290805
    88.6
    781
    6.13
    Q9VQS4
    NP_608791
    AAF51090
    Polypeptides with Identical Sequences

    There is only one protein coding transcript and one polypeptide associated with this gene

    Additional Polypeptide Data and Comments
    Reported size (kDa)
    Comments
    External Data
    Crossreferences
    Linkouts
    Sequences Consistent with the Gene Model
    Mapped Features

    Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\Spindly using the Feature Mapper tool.

    External Data
    Crossreferences
    Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
    Linkouts
    Expression Data
    Testis-specificity index

    The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

    -0.02

    Transcript Expression
    Additional Descriptive Data
    Marker for
     
    Subcellular Localization
    CV Term
    Polypeptide Expression
    Additional Descriptive Data
    Marker for
     
    Subcellular Localization
    CV Term
    Evidence
    References
    located_in kinetochore
    inferred from direct assay
    (Griffis et al., 2007)
    located_in microtubule
    inferred from direct assay
    (Griffis et al., 2007)
    Expression Deduced from Reporters
    High-Throughput Expression Data
    Associated Tools

    JBrowse - Visual display of RNA-Seq signals

    View Dmel\Spindly in JBrowse
    RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
    Bulk Downloads
    RNA-Seq RPKM values for all genes
    Reference
    See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
    Developmental Proteome: Life Cycle
    Developmental Proteome: Embryogenesis
    External Data and Images
    Linkouts
    DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species
    EMBL-EBI Single Cell Expression Atlas - Single cell expression across species
    FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
    FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
    Flygut - An atlas of the Drosophila adult midgut
    Images
    FlyBase Wiki
    Image Based Resources
    Alleles, Insertions, Transgenic Constructs, and Aberrations
    Classical and Insertion Alleles ( 3 )
    For All Classical and Insertion Alleles Show
     
    Other relevant insertions
    Transgenic Constructs ( 10 )
    For All Alleles Carried on Transgenic Constructs Show
    Transgenic constructs containing/affecting coding region of Spindly
    Transgenic constructs containing regulatory region of Spindly
    Aberrations (Deficiencies and Duplications) ( 1 )
    Inferred from experimentation ( 1 )
    Gene disrupted in
    Df(2L)Exel7017
    (Ryder, 2004.4.26)
    Inferred from location ( 4 )
    Variants
    Variant Molecular Consequences
    Alleles Representing Disease-Implicated Variants
    Phenotypes
    For more details about a specific phenotype click on the relevant allele symbol.
    Other Phenotypes
    Allele
    abnormal meiotic cell cycle | oogenesis, with Scer\GAL4VP16.mat.αTub67C
    Phenotype manifest in
    Allele
    oocyte, with Scer\GAL4VP16.mat.αTub67C
    Orthologs
    Downloads
    Download All DIOPT Orthologs
    Human Orthologs (via DIOPT v9.1)
    Species\Gene Symbol
    Score
    Best Score
    Best Reverse Score
    Source
    Compara
    Domainoid
    eggNOG
    Hieranoid
    Homologene
    Inparanoid
    OMA
    OrthoDB
    OrthoFinder
    OrthoInspector
    orthoMCL
    Panther
    Phylome
    SonicParanoid
    Alignment
    Complementation?
    Transgene?
    Homo sapiens (Human) (1)
    Hsap\SPDL1
    2 of 14
    Yes
    Yes
    Model Organism Orthologs (via DIOPT v9.1)
    Species\Gene Symbol
    Score
    Best Score
    Best Reverse Score
    Source
    Compara
    Domainoid
    eggNOG
    Hieranoid
    Homologene
    Inparanoid
    OMA
    OrthoDB
    OrthoFinder
    OrthoInspector
    orthoMCL
    Panther
    Phylome
    SonicParanoid
    Alignment
    Complementation?
    Transgene?
    Rattus norvegicus (Norway rat) (0)
    Mus musculus (laboratory mouse) (0)
    Xenopus tropicalis (Western clawed frog) (0)
    Danio rerio (Zebrafish) (0)
    Caenorhabditis elegans (Nematode, roundworm) (0)
    Anopheles gambiae (African malaria mosquito) (1)
    Agam\AgaP_AGAP013500
    3 of 12
    Yes
    Yes
    Arabidopsis thaliana (thale-cress) (0)
    Saccharomyces cerevisiae (Brewer's yeast) (0)
    Schizosaccharomyces pombe (Fission yeast) (0)
    Escherichia coli (enterobacterium) (0)
    Other Organism Orthologs (via OrthoDB)
    Data provided directly from OrthoDB:Spindly. Refer to their site for version information.
    Paralogs
    Downloads
    Download All DIOPT Paralogs
    Paralogs (via DIOPT v9.1)
    Human Disease Associations
    FlyBase Human Disease Model Reports
      Disease Ontology (DO) Annotations
      Models Based on Experimental Evidence ( 0 )
      Allele
      Disease
      Evidence
      References
      Potential Models Based on Orthology ( 0 )
      Human Ortholog
      Disease
      Evidence
      References
      Modifiers Based on Experimental Evidence ( 0 )
      Allele
      Disease
      Interaction
      References
      Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)
      Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
      Homo sapiens (Human)
      Gene name
      Score
      OMIM
      OMIM Phenotype
      DO term
      Complementation?
      Transgene?
      Functional Complementation Data
      Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
      Interactions
      Summary of Physical Interactions
      Interaction Browsers
      View in FlyBase Interactions Browser   View in MIST tool (external link)
      Please see the Physical Interaction reports below for full details
      protein-protein
      Physical Interaction
      Assay
      References
      Spindly - Aldo
      experimental knowledge based
      (Guruharsha et al., 2011)
      Spindly - CG12768
      experimental knowledge based
      (Guruharsha et al., 2011)
      Spindly - CG16959
      experimental knowledge based
      (Guruharsha et al., 2011)
      Spindly - CG31729
      experimental knowledge based
      (Guruharsha et al., 2011)
      Spindly - CG6550
      experimental knowledge based
      (Guruharsha et al., 2011)
      Spindly - CG8654
      experimental knowledge based
      (Guruharsha et al., 2011)
      Spindly - Cnx99A
      experimental knowledge based
      (Guruharsha et al., 2011)
      Spindly - Echs1
      experimental knowledge based
      (Guruharsha et al., 2011)
      Spindly - FipoQ
      experimental knowledge based
      (Guruharsha et al., 2011)
      Spindly - Idh3a
      experimental knowledge based
      (Guruharsha et al., 2011)
      Spindly - Inos
      experimental knowledge based
      (Guruharsha et al., 2011)
      Spindly - MRP
      experimental knowledge based
      (Guruharsha et al., 2011)
      Spindly - Mes2
      experimental knowledge based
      (Guruharsha et al., 2011)
      Spindly - Nfs1
      experimental knowledge based
      (Guruharsha et al., 2011)
      Spindly - Ost48
      experimental knowledge based
      (Guruharsha et al., 2011)
      Spindly - OstΔ
      experimental knowledge based
      (Guruharsha et al., 2011)
      Spindly - Pp1-13C
      two hybrid
      (Bennett et al., 2006)
      Spindly - Pp1-87B
      two hybrid
      (Bennett et al., 2006)
      Spindly - Pp1α-96A
      two hybrid
      (Bennett et al., 2006)
      Spindly - Pp2A-29B
      experimental knowledge based
      (Guruharsha et al., 2011)
      Spindly - Rdh1
      experimental knowledge based
      (Guruharsha et al., 2011)
      Spindly - RpS10b
      experimental knowledge based
      (Guruharsha et al., 2011)
      Spindly - RpS5a
      experimental knowledge based
      (Guruharsha et al., 2011)
      Spindly - Rpn11
      experimental knowledge based
      (Guruharsha et al., 2011)
      Spindly - SERCA
      experimental knowledge based
      (Guruharsha et al., 2011)
      Spindly - Sec61α
      experimental knowledge based
      (Guruharsha et al., 2011)
      Spindly - Sec63
      experimental knowledge based
      (Guruharsha et al., 2011)
      Spindly - Sil1
      experimental knowledge based
      (Guruharsha et al., 2011)
      Spindly - Tecr
      experimental knowledge based
      (Guruharsha et al., 2011)
      Spindly - UQCR-C2
      experimental knowledge based
      (Guruharsha et al., 2011)
      Spindly - ZnT63C
      experimental knowledge based
      (Guruharsha et al., 2011)
      Spindly - Zwilch
      pull down, anti tag western blot
      (Barbosa et al., 2020)
      Spindly - cPges
      experimental knowledge based
      (Guruharsha et al., 2011)
      Spindly - fax
      experimental knowledge based
      (Guruharsha et al., 2011)
      Spindly - flw
      two hybrid
      (Bennett et al., 2006)
      Spindly - lic
      experimental knowledge based
      (Guruharsha et al., 2011)
      Spindly - nsl1
      anti tag coimmunoprecipitation, Identification by mass spectrometry
      (Raja et al., 2010)
      Spindly - polo
      enzymatic study, autoradiography
      (Barbosa et al., 2020)
      Summary of Genetic Interactions
      Interaction Browsers
      Starting gene(s)
      Interaction type
      Interacting gene(s)
      Reference
      Starting gene(s)
      Interaction type
      Interacting gene(s)
      Reference
      External Data
      Linkouts
      BioGRID - A database of protein and genetic interactions.
      DroID - A comprehensive database of gene and protein interactions.
      MIST (protein-protein) - An integrated Molecular Interaction Database
      Pathways
      Signaling Pathways (FlyBase)
      Metabolic Pathways
      FlyBase
      External Links
      External Data
      Linkouts
      Class of Gene
      Genomic Location and Detailed Mapping Data
      Chromosome (arm)
      2L
      Recombination map
      2-10
      Cytogenetic map
      24A1-24A1
      Sequence location
      FlyBase Computed Cytological Location
      Cytogenetic map
      Evidence for location
      24A1-24A1
      Limits computationally determined from genome sequence between P{EP}ThorEP818&P{lacW}Thork07736 and P{PZ}oddrF111&P{PZ}for06860
      Experimentally Determined Cytological Location
      Cytogenetic map
      Notes
      References
      Experimentally Determined Recombination Data
      Location

      2-10

      (FlyBase, 2016)

      2-8.7

      (Comeron et al., 2012)
      Left of (cM)
      Right of (cM)
      Notes
      Stocks and Reagents
      Stocks (6)
      Genomic Clones (20)
      cDNA Clones (7)
       

      Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

      cDNA clones, fully sequenced
      BDGP DGC clones
      Other clones
        Drosophila Genomics Resource Center cDNA clones

        For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

        cDNA Clones, End Sequenced (ESTs)
        BDGP DGC clones
          Other clones
          RNAi and Array Information
          Linkouts
          DRSC - Results frm RNAi screens
          Antibody Information
          Laboratory Generated Antibodies
           

          polyclonal

          (Barbosa et al., 2020)
          Commercially Available Antibodies
           
          Cell Line Information
          Publicly Available Cell Lines
           
            Other Stable Cell Lines
             
              Other Comments

              The Spindly product recruits dynein to kinetochores.

              (Griffis et al., 2007)

              dsRNA has been synthesised for this gene and transfected into S2 cells. Spindly dsRNA causes interphase S2 cells to adopt an abnormal morphology with spiky and elongated microtubule-rich projections. The majority of dsRNA-treated cells become arrested in metaphase, an effect which can be rescued with a Spindly transgene. Spindly-depleted cells require 50% more time to form a metaphase plate compared with untreated cells.

              (Griffis et al., 2007)

              RNAi generated by PCR using primers directed to this gene causes a cell growth and viability phenotype when assayed in Kc167 and S2R+ cells.

              (Boutros et al., 2004)
              Relationship to Other Genes
              Source for database merge of
              Additional comments
              Nomenclature History
              Source for database identify of

              Source for identity of: Spindly CG15415

              (Griffis et al., 2007)
              Nomenclature comments
              Etymology

              Named "Spindly" due to the spindle-shaped interphase cell morphology and metaphase spindle phenotypes observed when this gene product is depleted.

              (Griffis et al., 2007)
              Synonyms and Secondary IDs (3)
              Datasets (0)
              Study focus (0)
              Experimental Role
              Project
              Project Type
              Title
              Study result (0)
              Result
              Result Type
              Title
              External Crossreferences and Linkouts ( 24 )
              Sequence Crossreferences
              NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
              GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
              RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
              UniProt/GCRP - The gene-centric reference proteome (GCRP) provides a 1:1 mapping between genes and UniProt accessions in which a single 'canonical' isoform represents the product(s) of each protein-coding gene.
              UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information
              Other crossreferences
              AlphaFold DB - AlphaFold provides open access to protein structure predictions for the human proteome and other key proteins of interest, to accelerate scientific research.
              DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species
              EMBL-EBI Single Cell Expression Atlas - Single cell expression across species
              FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
              FlyMine - An integrated database for Drosophila genomics
              KEGG Genes - Molecular building blocks of life in the genomic space.
              MARRVEL_MODEL - MARRVEL (model organism gene)
              Linkouts
              BioGRID - A database of protein and genetic interactions.
              Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones
              DroID - A comprehensive database of gene and protein interactions.
              DRSC - Results frm RNAi screens
              Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
              FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
              FlyCyc Genes - Genes from a BioCyc PGDB for Dmel
              Flygut - An atlas of the Drosophila adult midgut
              iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)
              Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution
              MIST (protein-protein) - An integrated Molecular Interaction Database
              References (42)