Please see the JBrowse view of Dmel\raskol for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.
Gene model reviewed during 5.51
Low-frequency RNA-Seq exon junction(s) not annotated.
Annotated transcripts do not represent all possible combinations of alternative exons and/or alternative promoters.
Gene model reviewed during 5.56
None of the polypeptides share 100% sequence identity.
Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\raskol using the Feature Mapper tool.
The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).
JBrowse - Visual display of RNA-Seq signals
View Dmel\raskol in JBrowse1-58
1-58.4
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.
For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.
RNAi generated by PCR using primers directed to this gene causes a cell growth and viability phenotype when assayed in Kc167 and S2R+ cells.
dsRNA made from templates generated with primers directed against this gene tested in RNAi screen for effects on Kc167 and S2R+ cell morphology.
New annotation (CG32559) in release 3 of the genome annotation.
Source for merge of: CG32559 CG32560
Source for merge of: CG42270 CG15816
Source for merge of: CG5898 CG5960
Annotations CG42270 and CG15816 merged as CG42684 in release 5.25 of the genome annotation.
Annotations CG32559 and CG32560 merged as CG42270 in release 5.8 of the genome annotation.
Annotations CG5898, CG5960 merged as CG32560 in release 3 of the genome annotation.
"CG15816" may correspond to "Scim5". Sequence analysis off ends of P{SUPor-P} in Scim insertion mutant places "Scim5" near/in "CG15816".
Source for merge of CG5898 CG5960 was a shared cDNA ( date:010720 ).
Source for identity of: raskol CG42684
Named "raskol" after the Russian term "to split" owing to its shared evolutionary history with, and subsequent split from, the shotgun (E-cadherin) gene.
