FB2026_02 , released June 18, 2026
Human Disease Model Report: Down syndrome, RCAN1-related
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General Information
Name
Down syndrome, RCAN1-related
FlyBase ID
FBhh0000345
Disease Ontology Term
Parent Disease
OMIM
Overview

RCAN1 (Regulator Of Calcineurin 1) was originally designated Down syndrome critical region gene 1 (DSCR1). Calcineurin participates in a number of cellular processes, including regulation of synaptic vesicle recycling. There is a single fly ortholog of RCAN1, Dmel\sra, for which classical loss-of-function alleles, RNAi-targeting constructs, and alleles caused by insertional mutagenesis have been generated. Dmel\sra is also orthologous to the human genes RCAN2 and RCAN3.

A UAS construct of a tagged wild-type human Hsap\RCAN1 gene has been introduced into flies and has been made available; it has not been characterized.

Most loss-of-function alleles of sra result in lethality or female sterility. Some insertion alleles are viable and fertile without visible abnormalities, however they exhibit significant learning defects. Overexpression of UAS-sra, using systemic or pan-neuronal GAL4 drivers, also results in animals with learning defects, suggesting that precise regulation of sra is necessary to maintain optimum learning. Transient overexpression of sra is sufficient to cause learning defects, supporting a hypothesis that biochemical defects, rather than impaired neuronal development, contribute to the observed learning impairment. Physical and genetic interactions of sra have been reported; see below and in the sra gene report.

[updated Apr. 2018 by FlyBase; FBrf0222196]

Disease Summary Information
Parent Disease Summary: Down syndrome
Symptoms and phenotype

Down syndrome is characterized by a particular combination of phenotypic features that includes mental retardation and characteristic facial structure. Individuals with Down syndrome often have specific major congenital malformations such as those of the heart (30-40% in some studies) and of the gastrointestinal tract. 90% of Down syndrome patients have a significant hearing loss (Mazzoni et al., 1994; pubmed:7881226). A number of other diseases are observed at higher frequency among Down syndrome individuals, including leukemia (Robison, 1992; pubmed:1532221) and Alzheimer disease (Wisniewski et al., 1985; pubmed:3158266). [from MIM:190685; 2016.07.19]

Specific Disease Summary: Down syndrome, RCAN1-related
OMIM report
Human gene(s) implicated
Symptoms and phenotype
Genetics
Cellular phenotype and pathology
Molecular information

RCAN1 (Regulator Of Calcineurin 1) encodes a protein that interacts with calcineurin A and inhibits calcineurin-dependent signaling pathways (Gene Cards, RCAN1; 2016.07.25). Calcineurin inhibitors impair synaptic vesicle recycling and reduce the total vesicle pool size in synaptic terminals (references cited in FBrf0208963).

External links
Disease synonyms
Ortholog Information
Human gene(s) in FlyBase
Human gene (HGNC)
D. melanogaster ortholog (based on DIOPT)
Comments on ortholog(s)

Many to one: 3 human to 1 Drosophila; the fly gene sra is orthologous to RCAN1, RCAN2, and RCAN3 in human.

Other mammalian ortholog(s) used
    D. melanogaster Gene Information (1)
    Gene Groups / Pathways
      Comments on ortholog(s)

      High-scoring ortholog of human genes RCAN1, RCAN2, and RCAN3 (1 Drosophila to 3 human). Dmel\sra shares 33-41% identity and 49-57% similarity with the human genes.

      Orthologs and Alignments from DRSC
      DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
      Other Genes Used: Viral, Bacterial, Synthetic (0)
        Summary of Physical Interactions (5 groups)
        protein-protein
        Interacting group
        Assay
        References
        anti tag coimmunoprecipitation, multidimensional protein identification technology
        anti tag coimmunoprecipitation, western blot, multidimensional protein identification technology
        anti bait coimmunoprecipitation, western blot, anti tag coimmunoprecipitation, multidimensional protein identification technology
        anti tag coimmunoprecipitation, western blot, multidimensional protein identification technology, anti bait coimmunoprecipitation, anti tag western blot
        anti tag coimmunoprecipitation, anti tag western blot, peptide massfingerprinting
        Alleles Reported to Model Human Disease (Disease Ontology) (6 alleles)
        Models Based on Experimental Evidence ( 4 )
        Modifiers Based on Experimental Evidence ( 4 )
        Alleles Representing Disease-Implicated Variants
        Genetic Tools, Stocks and Reagents
        Sources of Stocks
        Contact lab of origin for a reagent not available from a public stock center.
        Bloomington Stock Center Disease Page
        Related mammalian, viral, bacterial, or synthetic transgenes
        Allele
        Transgene
        Publicly Available Stocks
        Selected Drosophila transgenes
        Allele
        Transgene
        Publicly Available Stocks
        RNAi constructs available
        Allele
        Transgene
        Publicly Available Stocks
        Selected Drosophila classical alleles
        Allele
        Allele class
        Mutagen
        Publicly Available Stocks
        loss of function allele
        P-element activity
        P-element activity
        loss of function allele
        Delta2-3 transposase
        Delta2-3 transposase
        Delta2-3 transposase
        loss of function allele
        gene targeting by homologous recombination
        loss of function allele
        Delta2-3 transposase
        loss of function allele
        P-element activity
        loss of function allele
        P-element activity
        loss of function allele
        P-element activity
        References (11)