FB2026_03 , released September 17, 2026
Human Disease Model Report: episodic ataxia, type 6
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General Information
Name
episodic ataxia, type 6
FlyBase ID
FBhh0000564
Disease Ontology Term
Parent Disease
Overview

This report describes episodic ataxia, type 6 (EA6), which is a subtype of episodic ataxia; EA6 exhibits autosomal dominant inheritance. The human gene implicated in this disease is SLC1A3 (solute carrier family 1 member 3), which encodes a high-affinity glutamate transporter that functions in the termination of excitatory neurotransmission in central nervous system; it also functions as an anion channel. There are multiple genes in this family in both human and fly. The Drosophila gene most closely related to SLC1A3 is Eaat1, for which an amorphic mutation, RNAi-targeting constructs, and alleles caused by insertional mutagenesis have been generated.

UAS constructs of the human Hsap\SLC1A3 gene have been introduced into flies, including wild-type with different molecular tags and a disease-associated variant. Heterologous rescue (functional complementation) has been observed for the assayed larval locomotor defect.

Variant(s) implicated in human disease tested (as transgenic human gene, SLC1A3): the P290R variant form of the human gene (Hsap\SLC1A3PR.UAS.Venus) has been introduced into flies; the mechanism of this pathological variant has been studied in detail using the fly model. Variant(s) implicated in human disease tested (as analogous mutation in fly gene): P243R in the fly Eaat1 gene (corresponds to P290R in the human SLC1A3 gene)(Eaat1PR.UAS.Venus).

Animals homozygous for an amorphic allele of Dmel\Eaat1 die during the larval stage; larvae exhibit locomotor and neurophysiology defects. Genetic interactions of Dmel\Eaat1 have been described; see the gene report for Dmel\Eaat1.

[updated Jun. 2017 by FlyBase; FBrf0222196]

Disease Summary Information
Parent Disease Summary: episodic ataxia
Symptoms and phenotype

Episodic ataxia is a neurologic condition characterized by spells of incoordination and imbalance, often associated with progressive ataxia (Jen et al., 2007; pubmed:17575281). [from MIM:160120; 2017.06.27]

Specific Disease Summary: episodic ataxia, type 6
OMIM report

[EPISODIC ATAXIA, TYPE 6; EA6](https://omim.org/entry/612656)

Human gene(s) implicated

[SOLUTE CARRIER FAMILY 1 (GLIAL HIGH AFFINITY GLUTAMATE TRANSPORTER), MEMBER 3; SLC1A3](https://omim.org/entry/600111)

Symptoms and phenotype

EA6 can also be associated with seizures, migraine, and hemiplegia (https://www.verywell.com/episodic-ataxia-2488684).

See general description above. EA6 is highly variable in severity and age of onset. [from MIM:612656; 2017.06.27]

Genetics

Episodic ataxia type 6 (EA6) is caused by heterozygous mutation in the SLC1A3 gene. [from MIM:612656; 2017.06.27]

Cellular phenotype and pathology
Molecular information

SLC1A3 functions in the termination of excitatory neurotransmission in central nervous system. [from Gene Cards, SLC1A3; 2017.06.27]

SLC1A3 (solute carrier family 1 member 3) is a member of a family of high-affinity sodium-dependent glutamate transporter molecules that regulate neurotransmitter concentrations at excitatory glutamatergic synapses (Kirschner et al., 1994; pubmed:8001975). SLC1A3 also functions as a glutamate-activated anion channel (summary by Winter et al., 2012; pubmed:23107647). [from MIM:600111; 2017.06.17]

External links
Disease synonyms
EA6
Ortholog Information
Human gene(s) in FlyBase
Human gene (HGNC)
D. melanogaster ortholog (based on DIOPT)
Comments on ortholog(s)

Many to one (6 human to 1 Drosophila). Human genes include SLC1A3, SLC1A6, SLC1A5, SLC1A4, SLC1A1, SLC1A7. A related human gene, SLC1A2, is more closely related to Dmel\Eaat2.

Other mammalian ortholog(s) used
    D. melanogaster Gene Information (1)
    Gene Snapshot
    Excitatory amino acid transporter 1 (Eaat1) encodes a transmembrane protein with a glutamate:sodium symporter activity. It is regulated by Notch signalling and contributes to larval locomotion and lifespan. [Date last reviewed: 2019-03-07]
    Gene Groups / Pathways
    Comments on ortholog(s)

    High-scoring ortholog of SLC1A3 and SLC1A6; moderate-scoring ortholog of additional human genes (1 Drosophila to many human). Dmel\Eaat1 shares 44% identity and 63% similarity with SLC1A3 and SLC1A6.

    Orthologs and Alignments from DRSC
    DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
    Other Genes Used: Viral, Bacterial, Synthetic (0)
      Summary of Physical Interactions (0 groups)
      Alleles Reported to Model Human Disease (Disease Ontology) (17 alleles)
      Models Based on Experimental Evidence ( 6 )
      Modifiers Based on Experimental Evidence ( 5 )
      Models Based on Experimental Evidence ( 10 )
      Modifiers Based on Experimental Evidence ( 1 )
      Allele
      Disease
      Interaction
      References
      Alleles Representing Disease-Implicated Variants
      Genetic Tools, Stocks and Reagents
      Sources of Stocks
      Contact lab of origin for a reagent not available from a public stock center.
      Bloomington Stock Center Disease Page
      Related mammalian, viral, bacterial, or synthetic transgenes
      Allele
      Transgene
      Publicly Available Stocks
      Selected Drosophila transgenes
      Allele
      Transgene
      Publicly Available Stocks
      RNAi constructs available
      Allele
      Transgene
      Publicly Available Stocks
      Selected Drosophila classical alleles
      Allele
      Allele class
      Mutagen
      Publicly Available Stocks
      amorphic allele - genetic evidence
      P-element activity
      References (16)