FB2026_03 , released September 17, 2026
Human Disease Model Report: neurodevelopmental disorder with dysmorphic facies and thin corpus callosum
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General Information
Name
neurodevelopmental disorder with dysmorphic facies and thin corpus callosum
FlyBase ID
FBhh0001508
Overview

This report describes neurodevelopmental disorder with dysmorphic facies and thin corpus callosum, an intellectual developmental disorder that exhibits autosomal dominant inheritance. The human gene implicated is SUPT16H, which encodes a member of the FACT (facilitates chromatin transcription) complex. There is one high-scoring fly ortholog, Dmel\dre4, for which a loss-of-function allele and RNAi-targeting constructs have been generated.

UAS constructs of the human Hsap\SUPT16H, gene, including wild-type SUPT16H and variants implicated in disease (T171I, G808R), have been introduced into flies. See the 'Disease-Implicated Variants' table below. Overexpression of wild-type or variant human SUPT16H in a wild-type Dmel\dre4 does not result in a phenotype, nor rescue lethality for Dmel\dre loss-of-function mutants. However, partial heterologous rescue (functional complementation) is observed for phenotypes resulting from tissue-specific RNAi knockdown for Dmel\dre4.

Flies homozygous for loss-of-function alleles of Dmel\dre4, or ubiquitous knockdown with an RNAi construct, typically die during the first or second instar. Tissue-specific RNAi knockdown results in severe tissue-specific phenotypes which can be partially rescued by expression of wild-type Hsap\SUPT16H; coexpression of disease-implicated variants show very limited rescue in affected tissues.

[updated Apr. 2024 by FlyBase; FBrf0222196]

Disease Summary Information
Disease Summary: neurodevelopmental disorder with dysmorphic facies and thin corpus callosum
OMIM report

[NEURODEVELOPMENTAL DISORDER WITH DYSMORPHIC FACIES AND THIN CORPUS CALLOSUM; NEDDFAC](https://omim.org/entry/619480)

Human gene(s) implicated

[SPT16 HOMOLOG, FACILITATES CHROMATIN REMODELING SUBUNIT; SUPT16H](https://omim.org/entry/605012)

Symptoms and phenotype

Neurodevelopmental disorder with dysmorphic facies and thin corpus callosum (NEDDFAC) is characterized by global developmental delay, impaired intellectual development with poor or absent speech and language, and dysmorphic facial features. Brain imaging tends to show thin corpus callosum and decreased white matter volume. Additional features such as seizures, cardiac defects, and behavioral abnormalities may also occur. The phenotype is variable (summary by Bina et al., 2020, pubmed:31924697). [from MIM:619480; 2023.03.21]

Genetics

Neurodevelopmental disorder with dysmorphic facies and thin corpus callosum (NEDDFAC) is caused by heterozygous mutation in the SUPT16H gene (605012) on chromosome 14q11. [from MIM:619480; 2023.03.21]

Cellular phenotype and pathology
Molecular information

The SUPT16H gene encodes a component of the FACT (facilitates chromatin transcription) complex, a chromatin-specific factor required for transcription elongation as well as for DNA replication and repair (summary by Belotserkovskaya et al., 2003, pubmed:12934006). [from MIM:605012; 2023.03.21]

External links
Disease synonyms
NEDDFAC
Ortholog Information
Human gene(s) in FlyBase
Human gene (HGNC)
D. melanogaster ortholog (based on DIOPT)
Comments on ortholog(s)

One to one (1 human to 1 Drosophila); SUPT16H has one high-scoring Drosophila ortholog, dre4.

Other mammalian ortholog(s) used
    D. melanogaster Gene Information (1)
    Gene Snapshot
    dre4 (dre4) encodes a chromatin regulator that, along with the product of Ssrp, forms the facilitates chromatin transcription (FACT) protein complex. FACT facilitates GAGA factor-directed chromatin remodeling. [Date last reviewed: 2019-03-07]
    Gene Groups / Pathways
    Comments on ortholog(s)

    High-scoring ortholog of human SUPT16H (1 Drosophila to 1 human).

    Orthologs and Alignments from DRSC
    DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
    Other Genes Used: Viral, Bacterial, Synthetic (0)
      Summary of Physical Interactions (10 groups)
      protein-protein
      Interacting group
      Assay
      References
      pull down, autoradiography, anti bait coimmunoprecipitation, western blot, anti tag coimmunoprecipitation, Identification by mass spectrometry
      anti tag coimmunoprecipitation, peptide massfingerprinting
      anti tag coimmunoprecipitation, peptide massfingerprinting, western blot
      experimental knowledge based
      tandem affinity purification, multidimensional protein identification technology, western blot
      tandem affinity purification, multidimensional protein identification technology, western blot
      anti bait coimmunoprecipitation, western blot
      pull down, anti tag western blot, experimental knowledge based, anti bait coimmunoprecipitation, autoradiography, western blot, molecular weight estimation by staining
      tandem affinity purification, multidimensional protein identification technology, western blot
      anti tag coimmunoprecipitation, western blot, peptide massfingerprinting
      Alleles Reported to Model Human Disease (Disease Ontology) (6 alleles)
      Models Based on Experimental Evidence ( 3 )
      Modifiers Based on Experimental Evidence ( 3 )
      Models Based on Experimental Evidence ( 2 )
      Modifiers Based on Experimental Evidence ( 1 )
      Alleles Representing Disease-Implicated Variants
      Genetic Tools, Stocks and Reagents
      Sources of Stocks
      Contact lab of origin for a reagent not available from a public stock center.
      Bloomington Stock Center Disease Page
      Related mammalian, viral, bacterial, or synthetic transgenes
      Allele
      Transgene
      Publicly Available Stocks
      Selected Drosophila transgenes
      Allele
      Transgene
      Publicly Available Stocks
      RNAi constructs available
      Allele
      Transgene
      Publicly Available Stocks
      Selected Drosophila classical alleles
      Allele
      Allele class
      Mutagen
      Publicly Available Stocks
      amorphic allele - genetic evidence
      CRISPR/Cas9
      References (6)