Common markers in genotypes of TE insertion collections are listed below. The genotypes of many stocks have been altered through the years, but based on genotypes in the BDSC stock list these were the initial markers/aberrations/insertions in most lines in a collection when the stocks were added to the BDSC. In some cases allele identities have been communicated to the BDSC without publication.
TI_set_P{hsneo}.BDGP
mwh1 red1 e1
TI_set_P{PZ}.BDGP
ry506 (Rubin ‘r’ lines)
cn1; ry506 (Spradling lethals & steriles)
TI_set_P{lacW}.BDGP
multiple sources (Jan, Kiss, Laughon)
y1 w1118 (Laughon ‘L’ lines)
y1 w67c23 (Kiss ‘k’ lines)
y1 w* (Jan ‘j’ lines)
y1 w1118 (other Jan ‘j’ lines)
TI_set_P{GT1}.BG
w1118
TI_set_P{SUPor-P}.KG
C(1;Y), y1; ry506
y1; ry506 
y1 w67c23; ry506
TI_set_P{EPgy2}.EY
y1 w67c23
TI_set_Mi{ET1}.MB
w1118
y1 w67c23
TI_set_Mi{MIC}.MI 
y1 w*
TI_set_P{XP}.Exel.d
w1118
TI_set_PBac{PB}.Exel.c
w1118
TI_set_PBac{RB}.Exel.e
w1118
TI_set_PBac{WH}.Exel.f
w1118
TI_set_P{EP}.G
w*
w1118
y1 w*
TI_set_P{EP}.EP
w1118
TI_set_P{wHy}.DG
y1 w67c23
TI_set_PBac{5HPw+}.PA
y1 w1118
TI_set_PBac{3HPy+}.PC
y1 w1118
TI_set_PBac{GAL4D,EYFP}.PL
w*; cn1 bw1; P{FRT(whs)}2A P{neoFRT}82B
TI_set_P{Mae-UAS.6.11}.LA
y1 w*
TI_set_P{Mae-UAS.6.11}.DP
y1 w67c23
TI_set_P{EPg}.HP
w1118
TI_set_P{Mae-UAS.6.11}.GG
w67c23
y1 w67c23
TI_set_P{lacW}.G
w67c23
TI_set_P{GT1}.GT
w1118
TI_set_P{lacW}.SH
w*
TI_set_P{lacW}.S
w1118