A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Gene Dmel\E(var)87F

General Information
SymbolDmel\E(var)87FSpeciesD. melanogaster
NameEnhancer of variegation 3Annotation symbol
Feature typegeneFlyBase IDFBgn0000597
Gene Model StatusUnannotated Stock availability None publicly available
Also Known AsE-var(3)3
Genomic Location
Chromosome (arm)Recombination map3-[54]
Cytogenetic map87E12-87F11Sequence location
hide Summary Information
Automatically generated summary

See sections below for more information
The gene Enhancer of variegation 3 is referred to in FlyBase by the symbol Dmel\E(var)87F (FBgn0000597). It is a gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 6 alleles are reported. No phenotypic data is available. It has no annotated transcripts. Gene has not been localized to the genome sequence.

User Contributed Data
hide Recent Updates
Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
Update Feed
Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
atom feed
FB2013_03
FB2013_02
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
87E12-87F11  
Left limit from (method unavailable) (FBrf0050576) Right limit from (method unavailable) (FBrf0050576)  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
87E12-87F11  
Location based on deficiency mapping.  
(Wustmann et al., 1989)
Experimentally Determined Recombination Data
Location
3-84.3
(Dorn et al., 1993)
3-[54]
 
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
hide Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term
Evidence
References
hide Expression Deduced from Reporters
hide High-Throughput Expression Data
Associated Tools
Reference
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
hide FlyAtlas Anatomy Microarray
hide modENCODE Anatomy RNA-Seq
hide modENCODE Development RNA-Seq
hide modENCODE Cell Lines RNA-Seq
hide modENCODE Treatments RNA-Seq
hide Expression Clusters
hide External Data & Images
Linkouts
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Other Phenotypes
Allele
enhancer of variegation | dominant, with In(1)wm4h
Phenotype manifest in
Allele
hide Classical Alleles ( 6 )
For All Classical Alleles Show

Allele of E(var)87FClassMutagenStocksKnown lesion
E(var)87F10 --
E(var)87F20 --
E(var)87F30 --
E(var)87F40 --
E(var)87F50 --
E(var)87F60 --
hide Alleles Carried on Transgenic Constructs ( 0 )
For All Alleles Carried on Transgenic Constructs Show

Allele of E(var)87FClassMutagenStocksKnown lesion
hide Aneuploid Aberrations
Disrupted in
(Reuter et al., 1987)
Not disrupted in
(Reuter et al., 1987)
(Reuter et al., 1987)
(Reuter et al., 1987)
(Reuter et al., 1987)
(Reuter et al., 1987)
(Reuter et al., 1987)
(Reuter et al., 1987)
(Reuter et al., 1987)
(Reuter et al., 1987)
(Reuter et al., 1987)
(Reuter et al., 1987)
(Reuter et al., 1987)
(Reuter et al., 1987)
(Reuter et al., 1987)
(Reuter et al., 1987)
(Reuter et al., 1987)
(Reuter et al., 1987)
(Reuter et al., 1987)
(Reuter et al., 1987)
(Reuter et al., 1987)
(Reuter et al., 1987)
(Reuter et al., 1987)
(Reuter et al., 1987)
(Reuter et al., 1987)
(Reuter et al., 1987)
(Reuter et al., 1987)
(Reuter et al., 1987)
(Reuter et al., 1987)
(Reuter et al., 1987)
(Reuter et al., 1987)
(Reuter et al., 1987)
Not duplicated in
(Reuter et al., 1987)
(Reuter et al., 1987)
(Reuter et al., 1987)
(Reuter et al., 1987)
(Reuter et al., 1987)
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
Insertions
Type of insertions
Name
Expression data
miscellaneous insertions
P{}E(var)87F1
NA
P{}E(var)87F2
NA
P{}E(var)87F3
NA
P{}E(var)87F4
NA
P{}E(var)87F5
NA
P{}E(var)87F6
NA
hide Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
hide Terms Based on Experimental Evidence ( 0 terms )
hide Terms Based on Predictions or Assertions ( 0 terms )
hide Sequence Ontology: Class of Gene
gene
 
hide Interactions & Pathways
hide Summary of Physical Interactions
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
E(var)87F allele
Gene
References
hide External Data
Linkouts
hide Orthologs
hide OrthoDB Orthologs (0) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
OrthoDB orthology group searches
(Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288)
Drosophila inclusive ortholog search
No orthologs identified
Dipteran inclusive ortholog search
No orthologs identified
Insect inclusive ortholog search
No orthologs identified
Arthropod inclusive ortholog search
No orthologs identified
Metazoa inclusive ortholog search
No orthologs identified
Orthologs in Drosophila Species (None identified)
No orthologies identified
Orthologs in non-Drosophila Dipterans (None identified)
No non-Drosophilid orthologies identified
Orthologs in non-Dipteran Insects (None identified)
No non-Dipteran orthologies identified
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
hide Human Orthologs (0)
Gene
OMIM
HGNC
hideAAA Orthologs (0) based on analysis using Dmel annotation version 4.3
No orthologs identified
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 0 )
hide Genomic Clones ( 0 )
hide cDNA Clones ( 0 )
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
•
hide Antibody Information
hide Other Information
hide Discoverer
hide Etymology
hide Identification
hide Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
hide Other Comments
Haplo enhancer. One of a series of enhancers of variegation inferred from the effects of segmental deficiencies and duplications on the phenotype of In(1)wm4.
 
hide External Crossreferences & Linkouts
Sequence Crossreferences
Other Crossreferences
Linkouts
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
•
hide Synonyms & Secondary IDs ( 6 )
Reported As
Symbol Synonym
E(var)3
 
E(var)3-3
 
E(var)8
 
E(var)87F
 
E-var(3)3
(Dorn et al., 1993, Wustmann et al., 1989, Reuter et al., 1987)
Name Synonym
Enhancer of variegation 3
 
Secondary FlyBase IDs
  • FBgn0000598
hide References ( 4 )
Research paper
Dorn et al., 1993, Genetics 133(2): 279--290
P transposon-induced dominant enhancer mutations of position-effect variegation in Drosophila melanogaster. [FBrf0058558]
Wustmann et al., 1989, Mol. Gen. Genet. 217: 520--527
The genetics of position-effect variegation modifying loci in Drosophila melanogaster. [FBrf0050576]
Reuter et al., 1987, Mol. Gen. Genet. 210: 429--436
Modifiers of position-effect variegation in the region from 86C to 88B of the Drosophila melanogaster third chromosome. [FBrf0047003]
Book
Lindsley and Zimm, 1992, The Genome of Drosophila melanogaster.
The Genome of Drosophila melanogaster. [FBrf0066905]