FlyBase Aberration Report: Dmel\Df(1)ED6829

General Information

Symbol

Df(1)ED6829

Species

D. melanogaster

Name

FlyBase ID

FBab0030442

Feature type

chromosomal_deletion

Computed Breakpoints include

[5C7-5C7];[5F3-5F3];

Features within 5C7--5F3

Genomic Maps

JBrowse

Sequence coordinates

X:5,901,976..5,901,976 (Df(1)ED6829:bk1)

(DrosDel Project, 2007.6.25)

X:6,353,095..6,353,095 (Df(1)ED6829:bk2)

(DrosDel Project, 2007.6.25)

Member of large scale dataset(s)

Dfs_DrosDel_set1

A set of isogenic deficiency stocks created by FLP-induced recombination between FRT-carrying transgenic insertions; molecularly defined deletion endpoints correspond to initial location of the progenitor insertions. Initial core set of 209 isogenic deletions provides ~60% euchromatic genome coverage.

(Ryder et al., 2007)

Nature of Aberration

Cytological Order

Progenitor

P{RS3r}CB-0914-3

(Ryder and Roote, 2005.11.4)

P{RS5r}5-SZ-3667

(Ryder and Roote, 2005.11.4)

Mutagen

FLPase

(Ryder and Roote, 2005.11.4)

Class of aberration (relative to wild type)

chromosomal_deletion

(FlyBase, 2007)

Class of aberration (relative to progenitor)

chromosomal_deletion

(Ryder and Roote, 2005.11.4, Ryder, 2003.6.17)

Breakpoints

5C7;5F3

(FlyBase Curators, 2008)

Causes alleles

Carries alleles

Transposon Insertions

P{3'.RS5+3.3'}ED6829

(Ryder and Roote, 2005.11.4)

Formalized genetic data

Genetic mapping information

Comments

Comments on Cytology

Confirmed by 3-step PCR confirmation as shown in http://www.drosdel.org.uk/del_confirm.php

(Ryder and Roote, 2005.11.4)

Limits of break 1 computationally determined from location of progenitor P insertion on genome sequence between P{EP}Act5C^EP1604&P{EP}EP444 and P{EP}EP1457^EP1457&P{EP}CG5928^EP1083 Limits of break 2 computationally determined from location of progenitor P insertion on genome sequence between P{EP}EP1402&P{EP}CG15893^EP1634 and P{EP}Ctr1A^EP1364&P{EP}EP1445

Sequence Crossreferences

DDBJ / EMBL / GenBank

DNA sequence

Protein sequence

Gene Deletion and Duplication Data

Genes Deleted / Disrupted

Complementation Data

Completely deleted / disrupted

Partially deleted / disrupted

Molecular Data

Completely deleted

Partially deleted

Genes NOT Deleted / Disrupted

Complementation Data

PpV

(Liu et al., 2019)

sov

(Hammond et al., 2020)

Molecular Data

Genes Duplicated

Complementation Data

Completely duplicated

Partially duplicated

Molecular Data

Completely duplicated

Partially duplicated

Genes NOT Duplicated

Complementation Data

Molecular Data

Affected Genes Inferred by Location (67)

Related Comments

Phenotypic Data

In combination with other aberrations

NOT in combination with other aberrations

Stocks (11)

Bloomington

8947

Df(1)ED6829, w¹¹¹⁸ P{3'.RS5+3.3'}ED6829/FM7h

33841

Dp(1;Y)BSC277, y⁺ P{3'.RS5+3.3'}BSC30, Bar^S/Df(1)ED6829, w¹¹¹⁸ P{3'.RS5+3.3'}ED6829/C(1)RA, In(1)sc^J1, In(1)sc⁸, l(1)1Ac¹, sc^J1 sc⁸

33842

Dp(1;Y)BSC278, y⁺ P{3'.RS5+3.3'}BSC30, Bar^S/Df(1)ED6829, w¹¹¹⁸ P{3'.RS5+3.3'}ED6829/C(1)RA, In(1)sc^J1, In(1)sc⁸, l(1)1Ac¹, sc^J1 sc⁸

33843

Dp(1;Y)BSC279, y⁺ P{3'.RS5+3.3'}BSC30, Bar^S/Df(1)ED6829, w¹¹¹⁸ P{3'.RS5+3.3'}ED6829/C(1)RA, In(1)sc^J1, In(1)sc⁸, l(1)1Ac¹, sc^J1 sc⁸

33844

Dp(1;Y)BSC280, y⁺ P{3'.RS5+3.3'}BSC30, Bar^S/Df(1)ED6829, w¹¹¹⁸ P{3'.RS5+3.3'}ED6829/C(1)RA, In(1)sc^J1, In(1)sc⁸, l(1)1Ac¹, sc^J1 sc⁸

33845

Dp(1;Y)BSC281, y⁺ P{3'.RS5+3.3'}BSC30, Bar^S/Df(1)ED6829, w¹¹¹⁸ P{3'.RS5+3.3'}ED6829/C(1)RA, In(1)sc^J1, In(1)sc⁸, l(1)1Ac¹, sc^J1 sc⁸

33846

Dp(1;Y)BSC282, y⁺ P{3'.RS5+3.3'}BSC30, Bar^S/Df(1)ED6829, w¹¹¹⁸ P{3'.RS5+3.3'}ED6829/C(1)RA, In(1)sc^J1, In(1)sc⁸, l(1)1Ac¹, sc^J1 sc⁸

33847

Dp(1;Y)BSC283, y⁺ P{3'.RS5+3.3'}BSC30, Bar^S/Df(1)ED6829, w¹¹¹⁸ P{3'.RS5+3.3'}ED6829/C(1)RA, In(1)sc^J1, In(1)sc⁸, l(1)1Ac¹, sc^J1 sc⁸

33848

Dp(1;Y)BSC284, y⁺ P{3'.RS5+3.3'}BSC30, Bar^S/Df(1)ED6829, w¹¹¹⁸ P{3'.RS5+3.3'}ED6829/C(1)RA, In(1)sc^J1, In(1)sc⁸, l(1)1Ac¹, sc^J1 sc⁸

33849

Dp(1;Y)BSC285, y⁺ P{3'.RS5+3.3'}BSC30, Bar^S/Df(1)ED6829, w¹¹¹⁸ P{3'.RS5+3.3'}ED6829/C(1)RA, In(1)sc^J1, In(1)sc⁸, l(1)1Ac¹, sc^J1 sc⁸

Kyoto

150175

w¹¹¹⁸ Df(1)ED6829 / FM7h

Notes on Origin

Discoverer

Balancer / Genotype Variants of the Aberration

Separable Components

Other Comments

Synonyms and Secondary IDs (1)

Reported As

Symbol Synonym

Df(1)ED6829

(Hammond et al., 2020, Li et al., 2020, Sawyer et al., 2020, Hope et al., 2019, Wang and Baker, 2015, Nie et al., 2014, FlyBase Curators, 2008, Crest et al., 2007)

Name Synonyms

Secondary FlyBase IDs

References (14)

Report Sections

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