FlyBase Gene Report: Dmel\Ldsdh1

General Information

Symbol

Dmel\Ldsdh1

Species

D. melanogaster

Name

Lipid droplet subset dehydrogenase 1

Annotation Symbol

CG2254

Feature Type

protein_coding_gene

FlyBase ID

FBgn0029994

Gene Model Status

Current

Stock Availability

8 publicly available

Gene Summary

Contribute a Gene Snapshot for this gene.

All Summaries

Alliance
Auto summary
Gene Group
Interactive Fly

Key Links

Genomic Location

Cytogenetic map

7D5-7D5

Sequence location

X:8,078,350..8,081,605 [-]

Recombination map

1-22

RefSeq locus

NC_004354 REGION:8078350..8081605

Sequence

Get Decorated FASTA

Genomic Maps

JBrowse

Other Genome Views

The following external sites may use different assemblies or annotations than FlyBase.

Function

Gene Ontology (GO) Annotations (3 terms)

Molecular Function (1 term)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (1 term)

CV Term

Evidence

References

enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

inferred from biological aspect of ancestor with PANTHER:PTN000671705

(GO Reference Genome Project, 2011-)

Biological Process (0 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (0 terms)

Cellular Component (2 terms)

Terms Based on Experimental Evidence (2 terms)

CV Term

Evidence

References

located_in endoplasmic reticulum

inferred from direct assay

(Thul et al., 2017)

located_in lipid droplet

inferred from direct assay

(Thul et al., 2017)

Terms Based on Predictions or Assertions (1 term)

CV Term

Evidence

References

is_active_in lipid droplet

inferred from biological aspect of ancestor with PANTHER:PTN001549090

(GO Reference Genome Project, 2011-)

Gene Group (FlyBase)

UNCLASSIFIED CH-OH OXIDOREDUCTASES, NAD OR NADP AS ACCEPTOR

Protein Family (UniProt)

Protein Signatures (InterPro)

Summaries

Gene Group (FlyBase)

UNCLASSIFIED CH-OH OXIDOREDUCTASES, NAD OR NADP AS ACCEPTOR -: This group comprises CH-OH oxidoreductases using NAD or NADP as acceptor that do not classify under other groups in FlyBase.

Gene Model and Products

Number of Transcripts

Number of Unique Polypeptides

Please see the JBrowse view of Dmel\Ldsdh1 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)

Isoform displayed:

Pfam protein domains

InterPro name

classification

start

end

Protein Domains (via SMART)

Isoform displayed:

SMART protein domains

InterPro name

classification

start

end

Structure

Protein 3D structure (Predicted by AlphaFold) (AlphaFold entry Q9W3K9)

If you don't see a structure in the viewer, refresh your browser.

Model Confidence:

Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

Experimentally Determined Structures

Crossreferences

Comments on Gene Model

Low-frequency RNA-Seq exon junction(s) not annotated.

Gene model reviewed during 5.50

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Assoc. CDS (aa)

Ldsdh1-RA

FBtr0071116

NM_132208

1404

320

Additional Transcript Data and Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

UniProt

RefSeq ID

GenBank

Ldsdh1-PA

FBpp0071071

35.6

320

7.50

Q9W3K9

NP_572436

AAF46316

Polypeptides with Identical Sequences

There is only one protein coding transcript and one polypeptide associated with this gene

Additional Polypeptide Data and Comments

Reported size (kDa)

Comments

External Data

Crossreferences

InterPro - A database of protein families, domains and functional sites

Linkouts

Sequences Consistent with the Gene Model

Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\Ldsdh1 using the Feature Mapper tool.

External Data

Crossreferences

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

CG2254_1

Linkouts

Expression Data

Testis-specificity index

The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

-0.68

Transcript Expression

in situ

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage 13 -- 16

embryonic/larval corpus allatum

(Fisher et al., 2012)

embryonic/larval fat body

(Fisher et al., 2012)

embryonic stage 14

embryonic/larval fat body

(Thul et al., 2017)

Additional Descriptive Data

Ldsdh1 transcripts are enriched in fat body in embryos.

(Thul et al., 2017)

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

immunolocalization

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage 14

embryonic/larval fat body

(Thul et al., 2017)

third instar larval stage

embryonic/larval anterior midgut

Comment: in lipid droplets

(Thul et al., 2017)

wandering third instar larval stage

embryonic/larval fat body

Comment: in lipid droplets

(Thul et al., 2017)

mass spectroscopy

Stage

Tissue/Position (including subcellular localization)

Reference

adult stage

adult head

• membrane

(Aradska et al., 2015)

day 7 of adulthood -- day 49 of adulthood

adult heart

(Cammarato et al., 2011)

Additional Descriptive Data

Ldsdh1 protein is detected in dispersed Ldsdh1-positive

(Thul et al., 2017)

circular-shaped signals in the fat body in embryos and in wandering third instar larvae. Ldsdh1 is prominantly expressed in the gut in early third instar larvae where it is described as being in numerous ring-shaped structures in the m2 region of the gut (near the proventriculus).

(Thul et al., 2017)

Marker for

Subcellular Localization

CV Term

Evidence

References

located_in endoplasmic reticulum

inferred from direct assay

(Thul et al., 2017)

located_in lipid droplet

inferred from direct assay

(Thul et al., 2017)

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

JBrowse - Visual display of RNA-Seq signals

View Dmel\Ldsdh1 in JBrowse

RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region

View exonic expression by developmental stage for Dmel\Ldsdh1

View exonic expression by tissue for Dmel\Ldsdh1

Bulk Downloads

RNA-Seq RPKM values for all genes

Reference

See Gelbart and Emmert, 2013 for analysis details and data files for all genes.

Developmental Proteome: Life Cycle

Developmental Proteome: Embryogenesis

External Data and Images

Linkouts

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0029994

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

31726/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0029994

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0029994

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0029994

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

Flygut - An atlas of the Drosophila adult midgut

FBgn0029994

Images

FlyExpress - Embryonic expression images (BDGP data)

Show all FlyExpress processed images for Dmel\Ldsdh1

Stages(s) 13-16

FlyBase Wiki

Image Based Resources

Alleles, Insertions, Transgenic Constructs, and Aberrations

Classical and Insertion Alleles ( 1 )

For All Classical and Insertion Alleles Show

Other relevant insertions

Transgenic Constructs ( 6 )

For All Alleles Carried on Transgenic Constructs Show

Transgenic constructs containing/affecting coding region of Ldsdh1

Transgenic constructs containing regulatory region of Ldsdh1

Aberrations (Deficiencies and Duplications) ( 0 )

Inferred from experimentation ( 0 )

Inferred from location ( 16 )

Variants

Variant Molecular Consequences

Alleles Representing Disease-Implicated Variants

Phenotypes

For more details about a specific phenotype click on the relevant allele symbol.

Lethality

Allele

viable, with Dcr-2^UAS.cDa, Scer\GAL4^elav.PLu

Ldsdh1^GD3278

viable, with Scer\GAL4^Mef2.PR

Ldsdh1^GD3278

viable, with Scer\GAL4^pnr-MD237

Ldsdh1^GD3278

Phenotype manifest in

Allele

Orthologs

Downloads

Download All DIOPT Orthologs

Human Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Homo sapiens (Human) (38)

Hsap\SDR16C5

6 of 14

Yes

5 of 14

5 of 14

5 of 14

4 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Model Organism Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Rattus norvegicus (Norway rat) (21)

Rnor\Sdr16c5

6 of 14

Yes

5 of 14

5 of 14

5 of 14

5 of 14

4 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Mus musculus (laboratory mouse) (20)

Mmus\Sdr16c5

6 of 14

Yes

Mmus\Sdr16c6

6 of 14

Yes

5 of 14

5 of 14

4 of 14

4 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Xenopus tropicalis (Western clawed frog) (28)

Xtro\hsd17b11

4 of 13

Yes

Xtro\hsd17b13

4 of 13

Yes

Xtro\LOC100494804

4 of 13

Yes

Xtro\rdh10

4 of 13

Yes

Xtro\rdh20

4 of 13

Yes

Xtro\sdr16c5

4 of 13

Yes

Xtro\synj2bp

4 of 13

Yes

3 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Danio rerio (Zebrafish) (29)

Drer\sdr16c5a

6 of 14

Yes

Drer\si:dkey-221h15.4

6 of 14

Yes

5 of 14

5 of 14

4 of 14

4 of 14

4 of 14

4 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Caenorhabditis elegans (Nematode, roundworm) (44)

Cele\dhs-4

8 of 14

Yes

Cele\dhs-29

7 of 14

Yes

6 of 14

5 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Anopheles gambiae (African malaria mosquito) (37)

Agam\AgaP_AGAP000275

12 of 12

Yes

Agam\AgaP_AGAP012953

12 of 12

Yes

5 of 12

5 of 12

4 of 12

4 of 12

4 of 12

3 of 12

3 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

Arabidopsis thaliana (thale-cress) (57)

Atha\AT2G17845

2 of 13

Yes

Atha\AT3G29260

2 of 13

Yes

Atha\SDR2

2 of 13

Yes

Atha\SDR3

2 of 13

Yes

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Saccharomyces cerevisiae (Brewer's yeast) (5)

Scer\YDL114W

9 of 13

Yes

Scer\TDA5

6 of 13

Scer\FOX2

1 of 13

Scer\SRL4

1 of 13

Yes

Scer\YMR226C

1 of 13

Schizosaccharomyces pombe (Fission yeast) (2)

Spom\SPBC16H5.14c

3 of 12

Yes

Spom\SPAC521.03

1 of 12

Escherichia coli (enterobacterium) (9)

Ecol\ydfG

2 of 11

Yes

1 of 11

1 of 11

1 of 11

1 of 11

1 of 11

1 of 11

1 of 11

1 of 11

Other Organism Orthologs (via OrthoDB)

Data provided directly from OrthoDB:Ldsdh1. Refer to their site for version information.

Paralogs

Downloads

Download All DIOPT Paralogs

Paralogs (via DIOPT v9.1)

Gene Symbol

Score

Source

Alignment

Drosophila melanogaster (Fruit fly) (41)

12 of 13

10 of 13

10 of 13

9 of 13

8 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

sro

2 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

naz

1 of 13

Pdh

1 of 13

rdhB

1 of 13

scu

1 of 13

Wwox

1 of 13

Human Disease Associations

FlyBase Human Disease Model Reports

Disease Ontology (DO) Annotations

Models Based on Experimental Evidence ( 0 )

Allele

Disease

Evidence

References

Potential Models Based on Orthology ( 0 )

Human Ortholog

Disease

Evidence

References

Modifiers Based on Experimental Evidence ( 0 )

Allele

Disease

Interaction

References

Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)

Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.

Homo sapiens (Human)

Gene name

Score

OMIM

OMIM Phenotype

DO term

Complementation?

Transgene?

SDR16C5; short chain dehydrogenase/reductase family 16C member 5

6 of 14

608989

HSD17B11; hydroxysteroid 17-beta dehydrogenase 11

5 of 14

612831

HSD17B13; hydroxysteroid 17-beta dehydrogenase 13

5 of 14

612127

FATTY LIVER DISEASE, PROTECTION FROM; FLDP

RDH10; retinol dehydrogenase 10

5 of 14

607599

DHRS3; dehydrogenase/reductase 3

4 of 14

612830

CRANIOSYNOSTOSIS-SCOLIOSIS SYNDROME; CRSS

Functional Complementation Data

Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.

Interactions

Summary of Physical Interactions

Interaction Browsers

View in FlyBase Interactions Browser View in MIST tool (external link)

Please see the Physical Interaction reports below for full details

protein-protein

Physical Interaction

Assay

References

Ldsdh1

split luciferase complementation, luminiscence technology

(Kolkhof et al., 2017)

Ldsdh1 - CG10237

experimental knowledge based

(Guruharsha et al., 2011)

Ldsdh1 - Gpat4

split luciferase complementation, luminiscence technology

(Kolkhof et al., 2017)

Ldsdh1 - Jabba

split luciferase complementation, luminiscence technology

(Kolkhof et al., 2017)

Ldsdh1 - sturkopf

split luciferase complementation, luminiscence technology

(Kolkhof et al., 2017)

Ldsdh1 - α-Est7

split luciferase complementation, luminiscence technology

(Kolkhof et al., 2017)

Summary of Genetic Interactions

Interaction Browsers

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

External Data

Linkouts

DroID - A comprehensive database of gene and protein interactions.

FBgn0029994

MIST (protein-protein) - An integrated Molecular Interaction Database

31726

Pathways

Signaling Pathways (FlyBase)

Metabolic Pathways

FlyBase

External Links

External Data

Linkouts

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

Class of Gene

nuclear_gene

protein_coding_gene

Genomic Location and Detailed Mapping Data

Chromosome (arm)

Recombination map

1-22

Cytogenetic map

7D5-7D5

Sequence location

X:8,078,350..8,081,605 [-]

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

7D5-7D5

Limits computationally determined from genome sequence between P{EP}sn^EP1217 and P{EP}Ubc-E2H^EP1303

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

1-22

(FlyBase, 2016)

1-22.2

(Comeron et al., 2012)

Left of (cM)

Right of (cM)

Notes

Stocks and Reagents

Stocks (8)

Aberrations including deletions of this gene Aberrations including duplications of this gene

Bloomington

50999

y¹ v¹; P{TRiP.HMJ21112}attP40

94393

w^* TI{CRIMIC.TG4.2}Ldsdh1^{CR60350-TG4.2}

36731

y¹ sc^* v¹ sev²¹; P{TRiP.HMS01622}attP2

NIG-Fly

2254R-2

P{NIG.2254R}2

HMJ21112

y¹ v¹; P{TRiP.HMJ21112}attP40/CyO

HMS01622

y¹ sc^* v¹ sev²¹; P{TRiP.HMS01622}attP2

VDRC

v101149

P{KK105040}VIE-260B

v5470

w¹¹¹⁸; P{GD3278}v5470

Genomic Clones (15)

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones (37)

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequenced

BDGP DGC clones

RH47744

Other clones

FI02989

Drosophila Genomics Resource Center cDNA clones

For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

FBgn0029994

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

RNAi and Array Information

Linkouts

DRSC - Results frm RNAi screens

FBgn0029994

Antibody Information

Laboratory Generated Antibodies

polyclonal

(Thul et al., 2017)

Commercially Available Antibodies

Cell Line Information

Publicly Available Cell Lines

Other Stable Cell Lines

Other Comments

Relationship to Other Genes

Source for database merge of

Additional comments

Nomenclature History

Source for database identify of

Source for identity of: Ldsdh1 CG2254

(Thul et al., 2017)

Nomenclature comments

Etymology

The gene is named 'Ldsdh1' based on subcellular localization and annotated function.

(Thul et al., 2017)

Synonyms and Secondary IDs (3)

Reported As

Symbol Synonym

CG2254

(Santana et al., 2020, Christesen et al., 2017, Kolkhof et al., 2017, Thul et al., 2017, White-Grindley et al., 2014, Japanese National Institute of Genetics, 2012.5.21, Cammarato et al., 2011, Kühnlein, 2011, Ni et al., 2011.7.19, Beller et al., 2010, Nagoshi et al., 2010, Ni et al., 2010.12.1, Keleman et al., 2009.8.5, Beller et al., 2006, Beller et al., 2006)

Ldsdh1

(Song et al., 2022, Gene Disruption Project members, 2018-, Thul et al., 2017)

Name Synonyms

Lipid droplet subset dehydrogenase 1

Secondary FlyBase IDs

Datasets (0)

Study focus (0)

Experimental Role

Project

Project Type

Title

Study result (0)

Result

Result Type

Title

External Crossreferences and Linkouts ( 36 )

Sequence Crossreferences

NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

31726

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.

RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

UniProt/GCRP - The gene-centric reference proteome (GCRP) provides a 1:1 mapping between genes and UniProt accessions in which a single 'canonical' isoform represents the product(s) of each protein-coding gene.

Q9W3K9

UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information

Other crossreferences

AlphaFold DB - AlphaFold provides open access to protein structure predictions for the human proteome and other key proteins of interest, to accelerate scientific research.

Q9W3K9

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0029994

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

31726/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0029994

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0029994

FlyMine - An integrated database for Drosophila genomics

FBgn0029994

InterPro - A database of protein families, domains and functional sites

KEGG Genes - Molecular building blocks of life in the genomic space.

dme:Dmel_CG2254

MARRVEL_MODEL - MARRVEL (model organism gene)

31726

Linkouts

Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones

FBgn0029994

DroID - A comprehensive database of gene and protein interactions.

FBgn0029994

DRSC - Results frm RNAi screens

FBgn0029994

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

CG2254_1

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0029994

FlyCyc Genes - Genes from a BioCyc PGDB for Dmel

FBGN0029994

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

Flygut - An atlas of the Drosophila adult midgut

FBgn0029994

FlyMet - A comprehensive tissue-specific metabolomics resource for Drosophila.

FBgn0029994

iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)

MIST (protein-protein) - An integrated Molecular Interaction Database

31726

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

References (41)

The following external sites may use different assemblies or annotations than FlyBase.

-0.68

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