N63, LCBP1, helmsman, hlm, l(3)76BDx
secreted polysaccharide deacetylases - converts chitin to chitosan - required to assemble cable-like extracellular matrix and restrict tracheal tube elongation
Please see the JBrowse view of Dmel\verm for information on other features
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AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.
Low-frequency RNA-Seq exon junction(s) not annotated.
Gene model reviewed during 5.51
Gene model reviewed during 5.45
Annotated transcripts do not represent all possible combinations of alternative exons and/or alternative promoters.
Annotated transcripts do not represent all supported alternative splices within 5' UTR.
Gene model reviewed during 5.55
None of the polypeptides share 100% sequence identity.
Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\verm using the Feature Mapper tool.
The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).
JBrowse - Visual display of RNA-Seq signals
View Dmel\verm in JBrowse3-46
3-43.1
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.
For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.
Identification: By virtue of its expression in the fruit fly retina during visual system neural network development. Embryonic expression of anti-sense hlm RNA arrests outgrowth and branching in the developing trachea. Expression of anti-sense hlm RNA during visual system formation results in reduced visual acuity as assayed by the optomotor response, indicative of an abnormal neural network.
Identified in a subtractive hybridization screen for genes expressed in the adult nervous system.
Source for merge of: verm hlm
Source for identity of: verm LCBP1
Source for identity of: LCBP1 CG8756
Named "vermiform" based on the tracheal phenotypes of the mutants.