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General Information
Symbol
Dmel\siRNA
Species
D. melanogaster
Name
Annotation Symbol
Feature Type
FlyBase ID
FBgn0283511
Gene Model Status
Stock Availability
Gene Summary
Contribute a Gene Snapshot for this gene.
Function
GO Summary Ribbons
Gene Ontology (GO) Annotations (0 terms)
Molecular Function (0 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (0 terms)
Biological Process (0 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (0 terms)
Cellular Component (0 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (0 terms)
Gene Group (FlyBase)
Protein Family (UniProt)
-
Protein Signatures (InterPro)
    -
    Summaries
    Gene Model and Products
    Number of Transcripts
    0
    Number of Unique Polypeptides
    0
    Protein Domains (via Pfam)
    Isoform displayed:
    Pfam protein domains
    InterPro name
    classification
    start
    end
    Protein Domains (via SMART)
    Isoform displayed:
    SMART protein domains
    InterPro name
    classification
    start
    end
    Comments on Gene Model
    Sequence Ontology: Class of Gene
    Transcript Data
    Annotated Transcripts
    Additional Transcript Data and Comments
    Reported size (kB)
    Comments
    External Data
    Crossreferences
    Polypeptide Data
    Annotated Polypeptides
    Polypeptides with Identical Sequences

     

    Additional Polypeptide Data and Comments
    Reported size (kDa)
    Comments
    External Data
    Crossreferences
    Linkouts
    Sequences Consistent with the Gene Model
    Nucleotide / Polypeptide Records
      Mapped Features

      Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\siRNA using the Feature Mapper tool.

      External Data
      Crossreferences
      Linkouts
      Expression Data
      Expression Summary Ribbons
      Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.
      For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.
      Transcript Expression
      Additional Descriptive Data
      Marker for
       
      Subcellular Localization
      CV Term
      Polypeptide Expression
      Additional Descriptive Data
      Marker for
       
      Subcellular Localization
      CV Term
      Evidence
      References
      Expression Deduced from Reporters
      High-Throughput Expression Data
      Associated Tools

      GBrowse - Visual display of RNA-Seq signals

      View Dmel\siRNA in GBrowse 2
      RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
      Reference
      See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
      Developmental Proteome: Life Cycle
      Developmental Proteome: Embryogenesis
      External Data and Images
      Alleles, Insertions, Transgenic Constructs, and Aberrations
      Classical and Insertion Alleles ( 0 )
      For All Classical and Insertion Alleles Show
       
      Other relevant insertions
      Transgenic Constructs ( 0 )
      For All Alleles Carried on Transgenic Constructs Show
      Transgenic constructs containing/affecting coding region of siRNA
      Transgenic constructs containing regulatory region of siRNA
      Aberrations (Deficiencies and Duplications) ( 0 )
      Inferred from experimentation ( 0 )
      Inferred from location ( 0 )
        Phenotypes
        For more details about a specific phenotype click on the relevant allele symbol.
        Phenotype manifest in
        Allele
        Orthologs
        Human Orthologs (via DIOPT v8.0)
        Homo sapiens (Human) (0)
        No records found.
        Model Organism Orthologs (via DIOPT v8.0)
        Mus musculus (laboratory mouse) (0)
        No records found.
        Rattus norvegicus (Norway rat) (0)
        No records found.
        Xenopus tropicalis (Western clawed frog) (0)
        No records found.
        Danio rerio (Zebrafish) (0)
        No records found.
        Caenorhabditis elegans (Nematode, roundworm) (0)
        No records found.
        Arabidopsis thaliana (thale-cress) (0)
        No records found.
        Saccharomyces cerevisiae (Brewer's yeast) (0)
        No records found.
        Schizosaccharomyces pombe (Fission yeast) (0)
        No records found.
        Ortholog(s) in Drosophila Species (via OrthoDB v9.1) ( None identified )
        No orthologies identified
        Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( None identified )
        No non-Drosophilid orthologies identified
        Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( None identified )
        No non-Dipteran orthologies identified
        Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( None identified )
        No non-Insect Arthropod orthologies identified
        Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( None identified )
        No non-Arthropod Metazoa orthologies identified
        Paralogs
        Paralogs (via DIOPT v8.0)
        Drosophila melanogaster (Fruit fly) (0)
        No records found.
        Human Disease Associations
        FlyBase Human Disease Model Reports
          Disease Model Summary Ribbon
          Disease Ontology (DO) Annotations
          Models Based on Experimental Evidence ( 0 )
          Allele
          Disease
          Evidence
          References
          Potential Models Based on Orthology ( 0 )
          Human Ortholog
          Disease
          Evidence
          References
          Modifiers Based on Experimental Evidence ( 0 )
          Allele
          Disease
          Interaction
          References
          Disease Associations of Human Orthologs (via DIOPT v8.0 and OMIM)
          Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
          Homo sapiens (Human)
          Gene name
          Score
          OMIM
          OMIM Phenotype
          DO term
          Complementation?
          Transgene?
          Functional Complementation Data
          Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
          Interactions
          Summary of Physical Interactions
          esyN Network Diagram
          Interactions Browser
          Summary of Genetic Interactions
          esyN Network Diagram
          Starting gene(s)
          Interaction type
          Interacting gene(s)
          Reference
          Starting gene(s)
          Interaction type
          Interacting gene(s)
          Reference
          External Data
          Linkouts
          Pathways
          Signaling Pathways (FlyBase)
          Metabolic Pathways
          External Data
          Linkouts
          Genomic Location and Detailed Mapping Data
          Chromosome (arm)
          Recombination map
          Cytogenetic map
          Sequence location
          FlyBase Computed Cytological Location
          Cytogenetic map
          Evidence for location
          Experimentally Determined Cytological Location
          Cytogenetic map
          Notes
          References
          Experimentally Determined Recombination Data
          Location
          Left of (cM)
          Right of (cM)
          Notes
          Stocks and Reagents
          Stocks (0)
          Genomic Clones (0)
           
            cDNA Clones (0)
             

            Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

            cDNA clones, fully sequenced
            BDGP DGC clones
              Other clones
                Drosophila Genomics Resource Center cDNA clones

                For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

                  cDNA Clones, End Sequenced (ESTs)
                  BDGP DGC clones
                    Other clones
                      RNAi and Array Information
                      Linkouts
                      Antibody Information
                      Laboratory Generated Antibodies
                       
                      Commercially Available Antibodies
                       
                      Other Information
                      Relationship to Other Genes
                      Source for database identify of
                      Source for database merge of
                      Additional comments
                      Other Comments
                      Origin and Etymology
                      Discoverer
                      Etymology
                      Identification
                      External Crossreferences and Linkouts ( 0 )
                      Synonyms and Secondary IDs (2)
                      Reported As
                      Symbol Synonym
                      siRNA
                      (Luo et al., 2020, Besnard-Guérin et al., 2015, Chak et al., 2015, Feltzin et al., 2015, Iwasaki et al., 2015, Jimenez-Sanchez et al., 2015, Webster et al., 2015, Wen et al., 2015, Yao et al., 2015, Bronkhorst et al., 2014, Deshpande and Meller, 2014, Dueck and Meister, 2014, Elmer et al., 2014, Fukunaga and Zamore, 2014, Han and Zamore, 2014, Lim et al., 2014, Lim et al., 2014, Matts et al., 2014, Menon et al., 2014, Mirkovic-Hösle and Förstemann, 2014, Pandey et al., 2014, Piatek and Werner, 2014, Shpiz et al., 2014, Wakiyama and Yokoyama, 2014, Wang et al., 2014, Wang et al., 2014, Wen et al., 2014, Yang and Pillai, 2014, Yilmazel et al., 2014, Yun and Dasgupta, 2014, Barckmann and Simonelig, 2013, Benosman et al., 2013, Carré et al., 2013, Castel and Martienssen, 2013, Durdevic et al., 2013, Flores-Jasso et al., 2013, Ge and Zamore, 2013, Gomes et al., 2013, Hur et al., 2013, Knævelsrud et al., 2013, Lim et al., 2013, Marques et al., 2013, Meister, 2013, Nalavade et al., 2013, Nishida et al., 2013, Rozhkov et al., 2013, Sabin et al., 2013, Xie et al., 2013, Xiong et al., 2013, Yamanaka et al., 2013, Zhang et al., 2013, Backes et al., 2012, Dahal et al., 2012, de Vanssay et al., 2012, Fukunaga et al., 2012, Hedges et al., 2012, Helfer et al., 2012, Ji and Chen, 2012, Marco, 2012, Menon and Meller, 2012, Nesic et al., 2012, Paro et al., 2012, Qi et al., 2012, Wee et al., 2012, Zhang et al., 2012, Ameres et al., 2011, Antoniewski, 2011, Betanska et al., 2011, Birchler and Xie, 2011, Cenik et al., 2011, Ding and Lu, 2011, Gerbasi et al., 2011, Han et al., 2011, Harris et al., 2011, Hartig and Förstemann, 2011, Kawamata and Tomari, 2011, Lim et al., 2011, Liu et al., 2011, Maiti et al., 2011, Meng et al., 2011, Moshkovich et al., 2011, Nayak and Andino, 2011, Okamura et al., 2011, Pek and Kai, 2011, Qi et al., 2011, Qin et al., 2011, Rozhkov et al., 2011, Shih and Hunter, 2011, Tamura et al., 2011, Tchurikov and Kretova, 2011, Tian et al., 2011, van Mierlo et al., 2011, Welker et al., 2011, Xie et al., 2011, Yang and Li, 2011, Yu et al., 2011, Ameres et al., 2010, Bartkowiak et al., 2010, Förstemann, 2010, Gerbasi et al., 2010, Ghildiyal et al., 2010, Hain et al., 2010, Haley et al., 2010, Iwasaki et al., 2010, Jung et al., 2010, Lipardi and Paterson, 2010, Liu and Paroo, 2010, Marques et al., 2010, Miller et al., 2010, Miyoshi et al., 2010, Miyoshi et al., 2010, Moshkovich and Lei, 2010, Mukherjee and Hanley, 2010, Riedmann and Schwentner, 2010, Rozhkov et al., 2010, Shi et al., 2010, White et al., 2010, Wu et al., 2010, Berry et al., 2009, Czech et al., 2009, Fagegaltier et al., 2009, Flynt et al., 2009, Hartig et al., 2009, Heale et al., 2009, Hirst et al., 2009, James et al., 2009, Kotelnikov et al., 2009, Lau et al., 2009, Lee et al., 2009, Lipardi and Paterson, 2009, Lucchetta et al., 2009, Morciano et al., 2009, Pepper et al., 2009, Sabin et al., 2009, Singh et al., 2009, Thomson and Lin, 2009, Tomari, 2009, van Rij and Berezikov, 2009, Venkiteswaran and Hasan, 2009, Verdel et al., 2009, Zhou et al., 2009, Zhou et al., 2009, Aliyari et al., 2008, Berry et al., 2008, Chung et al., 2008, Conti and Adelstein, 2008, Deddouche et al., 2008, Emberly et al., 2008, Ghildiyal et al., 2008, Golden et al., 2008, Horabin and Olcese, 2008, Kalidas et al., 2008, Kavi and Birchler, 2008, Korbut et al., 2008, Lakatos and Burgyán, 2008, Lim et al., 2008, Liu et al., 2008, Melani et al., 2008, Misquitta et al., 2008, Miyoshi et al., 2008, Obbard and Finnegan, 2008, Okamura and Lai, 2008, Okamura et al., 2008, Okamura et al., 2008, Okamura et al., 2008, Ronsseray et al., 2008, Rudnick et al., 2008, Seinen and Sibon, 2008, Shpiz et al., 2008, Tang et al., 2008, Wu and Belasco, 2008, Ye and Liu, 2008, Yi et al., 2008, Zhou et al., 2008, Anonymous, 2007, Antoniewski et al., 2007, Berry et al., 2007, Bhadra et al., 2007, Blumenstiel et al., 2007, Chen et al., 2007, Eleftherianos et al., 2007, Förstemann et al., 2007, Galiana-Arnoux et al., 2007, Glaser et al., 2007, Gunawardane et al., 2007, Hartig et al., 2007, Horn et al., 2007, Horn et al., 2007, Horwich et al., 2007, Josse et al., 2007, Kavi and Birchler, 2007, Kim et al., 2007, Klattenhoff et al., 2007, Klattenhoff et al., 2007, Klenov et al., 2007, Lavrov and Kibanov, 2007, Liu et al., 2007, Moffat et al., 2007, Pelisson et al., 2007, Perrimon and Mathey-Prevot, 2007, Peters and Meister, 2007, Petruk et al., 2007, Ronsseray et al., 2007, Seinen and Sibon, 2007, Sharma and Nirenberg, 2007, Tchurikov and Kretova, 2007, Tomari et al., 2007, Ueda et al., 2007, Baqri et al., 2006, Bhadra et al., 2006, Dorner et al., 2006, Du et al., 2006, Kim et al., 2006, Liu et al., 2006, Megosh et al., 2006, Meyer et al., 2006, Nishida and Siomi, 2006, Petruk et al., 2006, Preall et al., 2006, Saito et al., 2006, Usakin et al., 2006, Vagin et al., 2006, Vagin et al., 2006, Valencia-Sanchez et al., 2006, Wakiyama et al., 2006, Yang and Wu, 2006, Zambon et al., 2006, Blumenstiel and Hartl, 2005, Blumenstiel and Hartl, 2005, Jiang et al., 2005, Kalidas et al., 2005, Kavi et al., 2005, Lipardi et al., 2005, Matranga et al., 2005, Miyoshi et al., 2005, Pham and Sontheimer, 2005, Preall and Sontheimer, 2005, Rand et al., 2005, Siomi et al., 2005, Sontheimer and Carthew, 2005, Tang, 2005, Tu and Akgul, 2005, Wakiyama et al., 2005, Wu et al., 2005, Blumenstiel and Hartl, 2004, Buckingham et al., 2004, Caudy and Hannon, 2004, Haley and Zamore, 2004, Hall, 2004, Hutvagner et al., 2004, Kawasaki et al., 2004, Lakatos et al., 2004, Lee et al., 2004, Lingel et al., 2004, Nakahara and Carthew, 2004, Okamura et al., 2004, Pham et al., 2004, Robert and Bucheton, 2004, Schwarz et al., 2004, Siomi et al., 2004, Snove et al., 2004, Tijsterman and Plasterk, 2004, Tomari et al., 2004, Tomari et al., 2004, Ui-Tei et al., 2004, Unwalla et al., 2004, Verma and Dey, 2004, Boutla et al., 2003, Churikov and Kretova, 2003, Goolsby and Shapiro, 2003, Gvozdev et al., 2003, Haley et al., 2003, Khvorova et al., 2003, Klenov et al., 2003, Lingel et al., 2003, Liu et al., 2003, Ono et al., 2003, Roignant et al., 2003, Schwarz et al., 2003, Silverstein and Mumby, 2003, Sledz et al., 2003, Song et al., 2003, Wei et al., 2003, Zeng et al., 2003, Hutvagner and Zamore, 2002, Ramaswamy and Slack, 2002, Schwarz et al., 2002, Williams and Rubin, 2002, Yang et al., 2002, Boutla et al., 2001, Elbashir et al., 2001, Elbashir et al., 2001, Elbashir et al., 2001, Lipardi et al., 2001, Nishikura, 2001, Nykanen et al., 2001, Scadden and Smith, 2001)
                      Name Synonyms
                      short interfering RNA
                      Secondary FlyBase IDs
                        Datasets (0)
                        Study focus (0)
                        Experimental Role
                        Project
                        Project Type
                        Title
                        References (297)