FB2026_02 , released June 18, 2026
Human Disease Model Report: hypotonia, ataxia, and delayed development syndrome
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General Information
Name
hypotonia, ataxia, and delayed development syndrome
FlyBase ID
FBhh0000715
Disease Ontology Term
Parent Disease
Overview

This report describes hypotonia, ataxia, and delayed development syndrome (HADDS): HADDS exhibits autosomal dominant inheritance. The human gene implicated in this disease is EBF3, which encodes a member of the COE transcription factor family. There are three additional COE transcription factors in human, EBF1, EBR2, and EBF4. In Drosophila, there is a single orthologous gene, knot (kn), for which classical amorphic and hypomorphic alleles, RNAi-targeting constructs, and alleles caused by insertional mutagenesis have been generated.

Multiple UAS constructs of the human Hsap\EBF3 have been introduced into flies, including wild-type and variants implicated in HADDS. Using a GAL4 driver insertion within the endogenous Dmel\kn, appropriate tissue-specific expression is observed. Heterologous rescue (functional complementation) has been demonstrated: expression of the human gene rescues the lethal phenotype of homozygous amorphic mutations of Dmel\kn. The functional activity of the disease-implicated variants has been characterized by assessing whether these forms can rescue the kn lethal phenotype.

Variant(s) implicated in human disease tested (as transgenic human gene, EBF3): the R163Q and R163L variant forms have been introduced into flies. Neither variant is able to rescue the kn lethal phenotype.

Animals homozygous for amorphic mutations of Dmel\kn die in the embryonic stage. In late larval stages, homozygous somatic clones exhibit neuroanatomy defects. Physical and genetic interactions of Dmel\kn have been described; see below and in the kn gene report.

[updated Jan. 2018 by FlyBase; FBrf0222196]

Disease Summary Information
Disease Summary: hypotonia, ataxia, and delayed development syndrome
OMIM report

[HYPOTONIA, ATAXIA, AND DELAYED DEVELOPMENT SYNDROME; HADDS](https://omim.org/entry/617330)

Human gene(s) implicated

[EARLY B-CELL FACTOR 3; EBF3](https://omim.org/entry/607407)

Symptoms and phenotype

HADDS is a neurodevelopmental syndrome characterized by congenital hypotonia, delayed psychomotor development, variable intellectual disability with speech delay, variable dysmorphic facial features, and ataxia, often associated with cerebellar hypoplasia. Some patients may have urogenital abnormalities (summary by Sleven et al., 2017; pubmed:28017370). [from MIM:617330; 2018.01.30]

Genetics

Hypotonia, ataxia, and delayed development syndrome (HADDS) is caused by heterozygous mutation in the EBF3 gene. [from MIM:617330; 2018.01.30]

Cellular phenotype and pathology
Molecular information

The EBF3 gene encodes a member of the highly conserved Collier/Olf/EBF (COE) family of transcription factors, which regulate neurogenesis and differentiation. [from MIM:607407; 2018.01.30]

External links
Disease synonyms
HADDS
HADD syndrome
Ortholog Information
Human gene(s) in FlyBase
Human gene (HGNC)
D. melanogaster ortholog (based on DIOPT)
Comments on ortholog(s)

Many to one: 4 human to 1 Drosophila; the human genes are EBF1, EBF2, EBF3, EBF4.

Other mammalian ortholog(s) used
    D. melanogaster Gene Information (1)
    Gene Snapshot
    knot (kn) encodes a transcription factor required for somatic and alary muscle specification and embryonic head segmentation. In larvae, it is required for wing disc patterning and plays a key role in the lymph gland, both under normal conditions and under immune stress. [Date last reviewed: 2019-03-14]
    Cellular component (GO)
    Gene Groups / Pathways
    Comments on ortholog(s)

    High-scoring ortholog of human EBF1, EBF2, EBF3, and EBF4 (1 Drosophila to 4 human). Dmel\kn shares 55-63% identity and 65-71% similarity with the human genes.

    Orthologs and Alignments from DRSC
    DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
    Other Genes Used: Viral, Bacterial, Synthetic (0)
      Summary of Physical Interactions (28 groups)
      protein-protein
      Interacting group
      Assay
      References
      electrophoretic mobility shift assay, autoradiography
      bimolecular fluorescence complementation, fluorescence microscopy
      bimolecular fluorescence complementation, fluorescence microscopy
      two hybrid array
      anti tag coimmunoprecipitation, western blot, anti bait coimmunoprecipitation
      two hybrid array
      two hybrid array
      two hybrid array, bimolecular fluorescence complementation, fluorescence microscopy
      two hybrid array
      two hybrid array
      two hybrid array
      two hybrid array
      bimolecular fluorescence complementation, fluorescence microscopy
      two hybrid array
      bimolecular fluorescence complementation, fluorescence microscopy
      Alleles Reported to Model Human Disease (Disease Ontology) (3 alleles)
      Models Based on Experimental Evidence ( 0 )
      Allele
      Disease
      Evidence
      References
      Modifiers Based on Experimental Evidence ( 1 )
      Allele
      Disease
      Interaction
      References
      Models Based on Experimental Evidence ( 2 )
      Modifiers Based on Experimental Evidence ( 0 )
      Allele
      Disease
      Interaction
      References
      Alleles Representing Disease-Implicated Variants
      Genetic Tools, Stocks and Reagents
      Sources of Stocks
      Contact lab of origin for a reagent not available from a public stock center.
      Bloomington Stock Center Disease Page
      Related mammalian, viral, bacterial, or synthetic transgenes
      Allele
      Transgene
      Publicly Available Stocks
      Selected Drosophila transgenes
      Allele
      Transgene
      Publicly Available Stocks
      RNAi constructs available
      Allele
      Transgene
      Publicly Available Stocks
      Selected Drosophila classical alleles
      Allele
      Allele class
      Mutagen
      Publicly Available Stocks
      loss of function allele
      CRISPR/Cas9
      loss of function allele
      CRISPR/Cas9
      loss of function allele
      CRISPR/Cas9
      amorphic allele - genetic evidence
      ethyl methanesulfonate
      loss of function allele
      ethyl methanesulfonate
      loss of function allele
      ethyl methanesulfonate
      References (13)