FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Human Disease Model Report: Coffin-Siris syndrome, ARID1A,1B-related
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General Information
Name
Coffin-Siris syndrome, ARID1A,1B-related
FlyBase ID
FBhh0001089
Disease Ontology Term
Parent Disease
OMIM
Overview

This report describes a Drosophila model using the fly gene osa to model an intellectual developmental disorder(s) caused by disruption of SWI/SNF complexes; see the general report for Coffin-Siris syndrome (FBhh0001088). Dmel\osa encodes a component of some SWI/SNF complexes; these complexes regulate transcription via chromatin remodeling. The osa protein is not a core member of this family of complexes: it encodes a component of the canonical complex, designated BAP in flies (analogous to BAF in human). Classical amorphic and hypomorphic alleles, RNAi-targeting constructs, and alleles caused by insertional mutagenesis have been generated for osa.

There are two genes orthologous to Dmel\osa in human, ARID1A and ARID1B, both of which are implicated in subtypes of Coffin-Siris syndrome (see FBhh0001090 and FBhh0001091). Neither human gene has been introduced into flies.

Animals homozygous for a loss-of-function mutation of osa die during the embryonic stage. RNAi-targeted knockdown of osa in the mushroom body (a brain region associated with learning and memory) causes male flies not to reduce courtship attempts after being rejected by a female, a measure of memory formation in flies. Impairment of long-term memory, but not short-term memory, is observed. Defects in mushroom body morphology are observed, including reduced survival of MBγ axons during ageing. Many physical and genetic interactions have been reported for Dmel\osa; see below and in the osa gene report.

[updated Jul. 2019 by FlyBase; FBrf0222196]

Disease Summary Information
Disease Summary: Coffin-Siris syndrome, ARID1A,1B-related
OMIM report
Human gene(s) implicated
Symptoms and phenotype
Genetics
Cellular phenotype and pathology
Molecular information

ARID1A and ARID1B encode members of the SWI/SNF family; members of this family have helicase and ATPase activities and are thought to regulate transcription of certain genes by localized chromatin remodeling (alteration of DNA-nucleosome topology). [Gene Cards, ARID1A, ARID1B; 2019.07.22]

External links
Disease synonyms
SSRIDD
SWI/SNF-related intellectual disability disorder
Ortholog Information
Human gene(s) in FlyBase
    Human gene (HGNC)
    D. melanogaster ortholog (based on DIOPT)
    Comments on ortholog(s)

    Many to one: 2 human to 1 Drosophila.

    Human gene (HGNC)
    D. melanogaster ortholog (based on DIOPT)
    Comments on ortholog(s)

    Many to one: 2 human to 1 Drosophila.

    Other mammalian ortholog(s) used
      D. melanogaster Gene Information (1)
      Gene Snapshot
      osa (osa) encodes a subunit of the BAP chromatin remodeling complex. It antagonizes Wnt target gene expression and limits the self-renewal of neural and intestinal stem cells. [Date last reviewed: 2019-03-14]
      Molecular function (GO)
      Gene Groups / Pathways
      Comments on ortholog(s)

      Moderate-scoring ortholog of human ARID1A and ARID1B (1 Drosophila to 2 human). Dmel\osa shares 27-28% identity and 37-38% similarity with the human genes.

      Orthologs and Alignments from DRSC
      DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
      Other Genes Used: Viral, Bacterial, Synthetic (0)
        Summary of Physical Interactions (31 groups)
        protein-protein
        Interacting group
        Assay
        References
        anti bait coimmunoprecipitation, molecular weight estimation by staining
        anti bait coimmunoprecipitation, molecular weight estimation by staining
        anti tag coimmunoprecipitation, Identification by mass spectrometry, protein cross-linking with a bifunctional reagent, experimental knowledge based, anti bait coimmunoprecipitation, molecular weight estimation by staining
        protein cross-linking with a bifunctional reagent, Identification by mass spectrometry, anti bait coimmunoprecipitation, molecular weight estimation by staining
        anti bait coimmunoprecipitation, western blot, Identification by mass spectrometry, peptide massfingerprinting, ion exchange chromatography, molecular sieving, experimental knowledge based
        experimental knowledge based
        experimental knowledge based
        nuclear magnetic resonance
        experimental knowledge based
        anti bait coimmunoprecipitation, western blot
        anti tag coimmunoprecipitation, Identification by mass spectrometry, protein cross-linking with a bifunctional reagent
        experimental knowledge based
        experimental knowledge based
        proximity-dependent biotin identification, Identification by mass spectrometry, anti bait coimmunoprecipitation, western blot
        experimental knowledge based
        experimental knowledge based
        experimental knowledge based
        experimental knowledge based
        experimental knowledge based
        anti bait coimmunoprecipitation, western blot, ion exchange chromatography, molecular sieving, experimental knowledge based, peptide massfingerprinting
        protein cross-linking with a bifunctional reagent, Identification by mass spectrometry
        anti bait coimmunoprecipitation, western blot
        experimental knowledge based
        anti tag coimmunoprecipitation, anti tag western blot
        anti bait coimmunoprecipitation, western blot, coimmunoprecipitation, molecular weight estimation by staining
        anti bait coimmunoprecipitation, western blot
        anti tag coimmunoprecipitation, comigration in sds page, anti tag western blot
        anti bait coimmunoprecipitation, western blot, two hybrid
        experimental knowledge based
        anti bait coimmunoprecipitation, peptide massfingerprinting
        far western blotting, autoradiography
        Alleles Reported to Model Human Disease (Disease Ontology) (3 alleles)
        Models Based on Experimental Evidence ( 1 )
        Allele
        Disease
        Evidence
        References
        Modifiers Based on Experimental Evidence ( 2 )
        Alleles Representing Disease-Implicated Variants
        Genetic Tools, Stocks and Reagents
        Sources of Stocks
        Contact lab of origin for a reagent not available from a public stock center.
        Bloomington Stock Center Disease Page
        Related mammalian, viral, bacterial, or synthetic transgenes
        Allele
        Transgene
        Publicly Available Stocks
        Selected Drosophila transgenes
        Allele
        Transgene
        Publicly Available Stocks
        RNAi constructs available
        Allele
        Transgene
        Publicly Available Stocks
        Selected Drosophila classical alleles
        Allele
        Allele class
        Mutagen
        Publicly Available Stocks
        References (5)