FB2026_03 , released September 17, 2026
Human Disease Model Report: intellectual disability, autosomal recessive 3
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General Information
Name
intellectual disability, autosomal recessive 3
FlyBase ID
FBhh0001636
Overview

This report describes intellectual disability, autosomal recessive 3. The human gene implicated in this diseases is CC2D1A, a transcriptional repressor active in neuronal cells. There is a single orthologous gene in Drosophila, l(2)gd1, for which multiple genetic reagents have been generated, including classical loss-of-function mutations, an RNAi-targeting construct, and alleles caused by insertional mutagenesis. Dmel\l(2)gd1 is also orthologous to the human gene CC2D1B.

UAS constructs of the human Hsap\CC2D1A have been introduced into flies, both wild-type and a variant implicated in this disease. See the 'Disease-Implicated Variants' table below. For the wild-type human gene, partial heterologous rescue (functional complementation) of the l(2)gd1 lethal phenotype has been demonstrated; the disease-implicated variant fails to rescue.

Animals homozygous for loss-of-function mutations for l(2)gd1 typically die in the late larval stage or during the pupal stage; over-proliferation of imaginal discs is observed. Both Hsap\CC2D1A and Hsap\CC2D1B have been tested for ability to rescue the l(2)gd1 lethal phenotype. Hsap\CC2D1B is more effective: one copy of Hsap\CC2D1B results in complete rescue, producing normal adult animals; two copies of Hsap\CC2D1A effect partial rescue, producing normally differentiated flies that fail to eclose (FBrf0230521).

[updated Jun. 2025 by FlyBase; FBrf0222196]

Disease Summary Information
Parent Disease Summary: intellectual disability, autosomal recessive
Symptoms and phenotype

Intellectual disability is characterized by impairments in intellectual functioning and adaptive behavior; symptoms must be present before a child becomes 18 years old (http://medical-dictionary.thefreedictionary.com/mental+retardation; 2016.01.19).

Intellectual disability can be subdivided into syndromic forms, characterized by cognitive impairment accompanied by dysmorphic features, malformations or neurological abnormalities, and nonsyndromic forms, characterized by cognitive impairment without additional features (Basel-Vanagaite, 2008; DOI: 10.1002/9780470015902.a0021454).

Specific Disease Summary: intellectual disability, autosomal recessive 3
OMIM report

[INTELLECTUAL DEVELOPMENTAL DISORDER, AUTOSOMAL RECESSIVE 3; MRT3](https://omim.org/entry/608443)

Human gene(s) implicated

[COILED-COIL AND C2 DOMAINS-CONTAINING PROTEIN 1A; CC2D1A](https://omim.org/entry/610055)

Symptoms and phenotype

MRT3 is a non-syndromic form of severe intellectual disability with psychomotor developmental delay (Basel-Vanagaite et al, 2003; pubmed:14569116). [from MIM:608443; 2025.06.03]

Genetics

Autosomal recessive intellectual developmental disorder 3 (MRT3) is caused by homozygous mutation in the CC2D1A gene. [from MIM:608443; 2025.06.03]

Cellular phenotype and pathology
Molecular information

CC2D1A encodes a transcription factor that binds specifically to the DRE (dual repressor element) and represses HTR1A gene transcription in neuronal cells.

External links
Disease synonyms
intellectual developmental disorder, autosomal recessive 3
MRT3
Ortholog Information
Human gene(s) in FlyBase
Human gene (HGNC)
D. melanogaster ortholog (based on DIOPT)
Comments on ortholog(s)

Many to one: 2 human genes to 1 Drosophila gene.

Other mammalian ortholog(s) used
    D. melanogaster Gene Information (1)
    Gene Snapshot
    lethal (2) giant discs 1 (l(2)gd1) encodes a cytosolic protein conserved in Metazoa. It is involved in the transport of proteins such as signaling receptors through the endosomal pathway. It interacts with the ESCRT-III core component encoded by shrb and is probably required for its full activity. [Date last reviewed: 2019-09-26]
    Gene Groups / Pathways
    Comments on ortholog(s)

    High-scoring ortholog of human CC2D1A and CC2D1B (1 Drosophila to 2 human).

    Orthologs and Alignments from DRSC
    DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
    Other Genes Used: Viral, Bacterial, Synthetic (0)
      Summary of Physical Interactions (1 groups)
      protein-protein
      Interacting group
      Assay
      References
      anti tag coimmunoprecipitation, anti tag western blot, x-ray crystallography, predetermined participant, surface plasmon resonance, pull down, western blot
      Alleles Reported to Model Human Disease (Disease Ontology) (2 alleles)
      Models Based on Experimental Evidence ( 1 )
      Allele
      Disease
      Evidence
      References
      Modifiers Based on Experimental Evidence ( 1 )
      Alleles Representing Disease-Implicated Variants
      Genetic Tools, Stocks and Reagents
      Sources of Stocks
      Contact lab of origin for a reagent not available from a public stock center.
      Bloomington Stock Center Disease Page
      Related mammalian, viral, bacterial, or synthetic transgenes
      Allele
      Transgene
      Publicly Available Stocks
      Selected Drosophila transgenes
      Allele
      Transgene
      Publicly Available Stocks
      RNAi constructs available
      Allele
      Transgene
      Publicly Available Stocks
      Selected Drosophila classical alleles
      Allele
      Allele class
      Mutagen
      Publicly Available Stocks
      References (5)