FlyBase Aberration Report: Dmel\Df(3R)kar-D1

General Information

Symbol

Df(3R)kar-D1

Species

D. melanogaster

Name

FlyBase ID

FBab0002797

Feature type

chromosomal_deletion

Also Known As

Df(3R)kar^D1

Computed Breakpoints include

87A7;87D1-87D2

Features within 87A7--87D2

Sequence coordinates

Member of large scale dataset(s)

Nature of Aberration

Cytological Order

Progenitor

In(3R)AFA

(Hu et al., 1998)

Mutagen

X ray

Class of aberration (relative to wild type)

chromosomal_deletion

(FlyBase, 2007)

Class of aberration (relative to progenitor)

chromosomal_deletion

(Hu et al., 1998, Glover et al., 1995, Reuter et al., 1987, Gausz et al., 1981)

Breakpoints

87A7;87D3-87D4

(Gausz et al., 1981)

87A6-87A8;87D3-87D4

(Reuter et al., 1987)

87A7;87D1-87D2

(Glover et al., 1995)

87A7-87A8;87D1-87D2

(Hu et al., 1998)

Causes alleles

Hsp70Ab^D1

(Ish-Horowicz and Pinchin, 1980)

Carries alleles

Transposon Insertions

Formalized genetic data

Hsp70Aa << bk1 << mfas << kar << bk2 << l(3)j2C3

Genetic mapping information

Comments

Comments on Cytology

Ref: Caggese et al., 1979, Proc. natn. Acad. Sci. USA. 76: 2385--2389.

(Glover et al., 1995)

Left limit of break 1 from polytene analysis (FBrf0036541) Right limit of break 1 from inclusion of Hsp70Ab (FBrf0039297) Limits of break 2 from polytene analysis (FBrf0080055)

Sequence Crossreferences

DDBJ / EMBL / GenBank

DNA sequence

Protein sequence

Gene Deletion and Duplication Data

Genes Deleted / Disrupted

Complementation Data

Completely deleted / disrupted

aurA

(Glover et al., 1995, Yang and Ballinger, 1994, Tearle and Nusslein-Volhard, 1987, Gausz et al., 1981)

Cpn

(Yang and Ballinger, 1994)

Hsp70Ab

(Paro et al., 1983)

Hsp70Ba

(Gausz et al., 1981)

l(3)87Ad

(Gausz et al., 1981)

l(3)87Ae

(Gausz et al., 1981)

l(3)87Ba

(Gausz et al., 1981)

l(3)87Bb

(Gausz et al., 1981)

l(3)87Bc

(Gausz et al., 1981)

l(3)87Be

(Gausz et al., 1981)

l(3)87Bf

(Gausz et al., 1981)

l(3)87Bh

(Gausz et al., 1981)

l(3)87Bi

(Gausz et al., 1981)

l(3)87Bj

(Gausz et al., 1981)

l(3)87Bk

(Gausz et al., 1981)

l(3)87Bl

(Gausz et al., 1981)

l(3)87Bm

(Gausz et al., 1981)

mbo

(Spradling et al., 1999, BDGP Project Members, 1994-1999)

mfas

(Hu et al., 1998)

Pp1-87B

(Spradling et al., 1999, BDGP Project Members, 1994-1999, Reuter et al., 1987, Gausz et al., 1981)

svp

(Spradling et al., 1999, BDGP Project Members, 1994-1999, Gausz et al., 1981)

Vha55

(Spradling et al., 1999, BDGP Project Members, 1994-1999)

Partially deleted / disrupted

Molecular Data

Completely deleted

Partially deleted

Genes NOT Deleted / Disrupted

Complementation Data

Blm

(Szabad, 1998.4.8)

CtBP

(Spradling et al., 1999, BDGP Project Members, 1994-1999)

E(var)87F

(Reuter et al., 1987)

Hsp70Aa

(Yang and Ballinger, 1994, Paro et al., 1983, Gausz et al., 1981)

Hsp70Ab

(Yang and Ballinger, 1994)

l(3)86Fa

(Gausz et al., 1981)

l(3)86Fb

(Gausz et al., 1981)

l(3)86Fc

(Gausz et al., 1981)

l(3)86Fd

(Gausz et al., 1981)

l(3)86Fe

(Gausz et al., 1981)

l(3)86Ff

(Gausz et al., 1981)

l(3)86Fg

(Gausz et al., 1981)

l(3)87Aa

(Gausz et al., 1981)

l(3)87Ab

(Gausz et al., 1981)

l(3)j2C3

(BDGP Project Members, 1994-1999)

l(3)j2C5

(BDGP Project Members, 1994-1999)

l(3)neo39

(Spradling et al., 1999, BDGP Project Members, 1994-1999)

l(3)neo40

(BDGP Project Members, 1994-1999)

sad

(Giesen et al., 2003, Tearle and Nusslein-Volhard, 1987)

Su(var)3-7

(Reuter et al., 1987)

Su(var)3-13

(Reuter et al., 1987)

Su(var)3-14

(Reuter et al., 1987)

Molecular Data

Genes Duplicated

Complementation Data

Completely duplicated

Partially duplicated

Molecular Data

Completely duplicated

Partially duplicated

Genes NOT Duplicated

Complementation Data

Molecular Data

Affected Genes Inferred by Location (0)

If no genes are listed here, it may be because the affected region is very large. The JBrowse insert above may show an error for the same reason, and other FlyBase tools such as CytoSearch may also fail for large regions. You can contact FlyBase for more help.
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Related Comments

Phenotypic Data

In combination with other aberrations

Heterozygotes with Df(3R)T-47 exhibit normal development of the CNS midline cells, VUM neuron axons and tracheal system. The CNS axon scaffold is mutant in some embryos, embryos show a disorganisation of axons with poorly separated commissures. In combination with Abl¹ mutants exhibit severe axonal defects in which the longitudinals and commissures are thin or absent. Axons are disorganised and bulging.

(Hu et al., 1998)

NOT in combination with other aberrations

Stocks (1)

Kyoto

108652

Df(3R)kar-D1, In(3R)AFA, e^AFA gustM^AFA/cu¹ kar¹ Sb¹

Notes on Origin

Discoverer

Balancer / Genotype Variants of the Aberration

Separable Components

Other Comments

Obtained in the same set of experiments as Df(3R)kar-D2 and appears to be identical to it, the separate designation is presumably due to a stocking error.

(Caggese et al., 1979)

Deficiency for the 87C puff and retains the 87A puff.

(Ish-Horowicz et al., 1979)

Two deficiencies <up>Df(3R)kar-D1 and Df(3R)kar-D2</up> thought to be identical and listed separately through stock error according to FBrf0033817 (Caggese et al., 1979, Proc. Natl. Acad. Sci. USA 76: 2385--2389).

Synonyms and Secondary IDs (5)

Reported As

Symbol Synonym

Df(3R)Kar-D1

(Moon and Matsuzaki, 2013)

Df(3R)KarD¹

(Glover et al., 1995)

Df(3R)kar-D1

Df(3R)kar70-4D1

(Fernandez-Funez et al., 2000)

Df(3R)kar^D1

(Yang and Ballinger, 1994, Reuter et al., 1987, Jurgens et al., 1984, Paro et al., 1983, Ish-Horowicz and Pinchin, 1980, Caggese et al., 1979, Ish-Horowicz et al., 1979)

Name Synonyms

Secondary FlyBase IDs

References (23)

Report Sections

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