Please see the JBrowse view of Dmel\emp for information on other features
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AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.
Gene model reviewed during 5.52
Annotated transcripts do not represent all supported alternative splices within 5' UTR.
Low-frequency RNA-Seq exon junction(s) not annotated.
Gene model reviewed during 5.56
2.5 (northern blot)
519 (aa)
Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\emp using the Feature Mapper tool.
The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).
Comment: 96-120 hr AEL
Comment: 96-120 hr AEL
Comment: reference states >=6 hr AEL
emp transcript first appears during 6-8 hours of embryogenesis, and continues to be detected throughout development. During embryogenesis, expression is restricted to the ectoderm, and especially to various epithelial tissues, including embryonic epidermis and the foregut and hindgut epithelia. After germ band retraction, additional expression is detected in subepidermal tissue that may correspond to the tracheal tree. Expression in imaginal disc epithelial cells is detected in third instar larval through mid-pupal stages. In the third instar larval wing disc, expression is seen in columnar epithelial cells, but not in the adepithelial cells. Expression is also detected in the peripodial membrane.
JBrowse - Visual display of RNA-Seq signals
View Dmel\emp in JBrowse
2-107
2-111.8
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.
For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.
Source for identity of: emp CG2727