FlyBase Gene Report: Dmel\colt

General Information

Symbol

Dmel\colt

Species

D. melanogaster

Name

congested-like trachea

Annotation Symbol

CG3057

Feature Type

protein_coding_gene

FlyBase ID

FBgn0019830

Gene Model Status

Current

Stock Availability

10 publicly available

Gene Summary

Putative mitochondrial carrier of unknown solute specificity. Required for gas-filling of the tracheal system at hatching time of the embryo and for normal epithelial morphogenesis of the wings. (UniProt, Q9VQG4)

Contribute a Gene Snapshot for this gene.

All Summaries

Alliance
Auto summary
Gene Group
UniProtKB
Interactive Fly

Also Known As

CACT

Key Links

Genomic Location

Cytogenetic map

23A5-23A5

Sequence location

2L:2,768,590..2,770,069 [-]

Recombination map

2-7

RefSeq locus

NT_033779 REGION:2768590..2770069

Sequence

Get Decorated FASTA

Genomic Maps

JBrowse

Other Genome Views

The following external sites may use different assemblies or annotations than FlyBase.

Function

Gene Ontology (GO) Annotations (7 terms)

Molecular Function (1 term)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (1 term)

CV Term

Evidence

References

enables O-acyl-L-carnitine transmembrane transporter activity

inferred from biological aspect of ancestor with PANTHER:PTN002898998

(GO Reference Genome Project, 2011-)

Biological Process (4 terms)

Terms Based on Experimental Evidence (2 terms)

CV Term

Evidence

References

involved_in epithelial cell morphogenesis

inferred from mutant phenotype

(Hartenstein et al., 1997)

involved_in liquid clearance, open tracheal system

inferred from mutant phenotype

(Hartenstein et al., 1997)

Terms Based on Predictions or Assertions (2 terms)

CV Term

Evidence

References

involved_in carnitine transmembrane transport

inferred from biological aspect of ancestor with PANTHER:PTN002898998

(GO Reference Genome Project, 2011-)

involved_in mitochondrial transport

inferred from biological aspect of ancestor with PANTHER:PTN002898998

(GO Reference Genome Project, 2011-)

Cellular Component (2 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (2 terms)

CV Term

Evidence

References

located_in membrane

inferred from sequence model

(Hartenstein et al., 1997)

is_active_in mitochondrial envelope

inferred from biological aspect of ancestor with PANTHER:PTN002898998

(GO Reference Genome Project, 2011-)

Gene Group (FlyBase)

SLC25 FAMILY OF MITOCHONDRIAL TRANSPORTERS

Protein Family (UniProt)

Belongs to the mitochondrial carrier (TC 2.A.29) family. (Q9VQG4)

Protein Signatures (InterPro)

Summaries

Gene Group (FlyBase)

SLC25 FAMILY OF MITOCHONDRIAL TRANSPORTERS -: The solute carrier family 25 (SLC25) or mitochondrial carrier family (MCF) members shuttle metabolites, nucleotides and cofactors across the inner mitochondrial membrane. (Adapted from FBrf0212481, FBrf0212949 and PMID:23266187).

Protein Function (UniProtKB)

Putative mitochondrial carrier of unknown solute specificity. Required for gas-filling of the tracheal system at hatching time of the embryo and for normal epithelial morphogenesis of the wings.

(UniProt, Q9VQG4)

Gene Model and Products

Number of Transcripts

Number of Unique Polypeptides

Please see the JBrowse view of Dmel\colt for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)

Isoform displayed:

Pfam protein domains

InterPro name

classification

start

end

Protein Domains (via SMART)

Isoform displayed:

SMART protein domains

InterPro name

classification

start

end

Structure

Protein 3D structure (Predicted by AlphaFold) (AlphaFold entry Q9VQG4)

If you don't see a structure in the viewer, refresh your browser.

Model Confidence:

Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

Experimentally Determined Structures

Crossreferences

Comments on Gene Model

Multiple additional alternative polyA sites documented in FBrf0099765.

Gene model reviewed during 5.47

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Assoc. CDS (aa)

colt-RA

FBtr0077731

NM_057873

1480

306

colt-RD

FBtr0077734

NM_205894

1449

306

Additional Transcript Data and Comments

Reported size (kB)

1.4 (northern blot)

(Hartenstein et al., 1997)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

UniProt

RefSeq ID

GenBank

colt-PA

FBpp0077414

33.0

306

9.96

FBpp0089377

33.0

306

9.96

Q9VQG4

NP_995616

AAS64624

Polypeptides with Identical Sequences

The group(s) of polypeptides indicated below share identical sequence to each other.

306 aa isoforms: colt-PA, colt-PD

Additional Polypeptide Data and Comments

Reported size (kDa)

306 (aa); 33 (kD observed)

(Hartenstein et al., 1997)

Comments

External Data

Crossreferences

InterPro - A database of protein families, domains and functional sites

Linkouts

Sequences Consistent with the Gene Model

Nucleotide / Polypeptide Records

UniProt

Q9VQG4

Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\colt using the Feature Mapper tool.

External Data

Crossreferences

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

colt_1

Linkouts

Expression Data

Testis-specificity index

The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

2.67

Transcript Expression

northern blot

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage -- adult stage

(Hartenstein et al., 1997)

Additional Descriptive Data

colt transcript is detected in all developmental stages, but is most abundant in adults.

(Hartenstein et al., 1997)

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

mass spectroscopy

Stage

Tissue/Position (including subcellular localization)

Reference

adult stage

adult head

• membrane

(Aradska et al., 2015)

day 5 of adulthood | male -- day 7 of adulthood | male

spermatozoon

(Wasbrough et al., 2010)

day 7 of adulthood -- day 49 of adulthood

adult heart

(Cammarato et al., 2011)

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

JBrowse - Visual display of RNA-Seq signals

View Dmel\colt in JBrowse

RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region

View exonic expression by developmental stage for Dmel\colt

View exonic expression by tissue for Dmel\colt

Bulk Downloads

RNA-Seq RPKM values for all genes

Reference

See Gelbart and Emmert, 2013 for analysis details and data files for all genes.

Developmental Proteome: Life Cycle

Developmental Proteome: Embryogenesis

External Data and Images

Linkouts

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

33470/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0019830

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0019830

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0019830

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG3057

Flygut - An atlas of the Drosophila adult midgut

FBgn0019830

Images

FlyBase Wiki

Image Based Resources

Alleles, Insertions, Transgenic Constructs, and Aberrations

Classical and Insertion Alleles ( 8 )

For All Classical and Insertion Alleles Show

Other relevant insertions

Transgenic Constructs ( 7 )

For All Alleles Carried on Transgenic Constructs Show

Transgenic constructs containing/affecting coding region of colt

Transgenic constructs containing regulatory region of colt

Aberrations (Deficiencies and Duplications) ( 6 )

Inferred from experimentation ( 6 )

Gene disrupted in

Df(2L)Exel6277

(Ryder, 2004.4.26)

Df(2L)N6

(Hartenstein et al., 1997)

Df(2L)N19

(Hartenstein et al., 1997)

Gene not disrupted in

Df(2L)D20

(Hartenstein et al., 1997)

Df(2L)dpp^d14

(Hartenstein et al., 1997)

Df(2L)dpp-H34

(Hartenstein et al., 1997)

Inferred from location ( 11 )

Variants

Variant Molecular Consequences

Alleles Representing Disease-Implicated Variants

Phenotypes

For more details about a specific phenotype click on the relevant allele symbol.

Lethality

Allele

lethal | recessive

partially lethal - majority die | recessive

colt^P

viable, with Dcr-2^UAS.cDa, Scer\GAL4^elav.PLu

colt^GD841

viable, with Scer\GAL4^pnr-MD237

colt^GD841

viable, with Scer\GAL4^tin.CΔ4

colt^GD841

Sterility

Allele

female semi-sterile

colt^P

Other Phenotypes

Allele

abnormal size | third instar larval stage, with Scer\GAL4^Cg.PA

colt^HMC03354

decreased sleep | adult stage, with Scer\GAL4^GS.repo

colt^HMC03354

Phenotype manifest in

Allele

embryonic/larval fat body | third instar larval stage, with Scer\GAL4^Cg.PA

colt^HMC03354

larval tracheal system

colt^P

mitochondrion | third instar larval stage, with Scer\GAL4^Cg.PA

colt^HMC03354

wing

colt^P

wing & trichome

colt^P

wing vein

colt^P

Orthologs

Downloads

Download All DIOPT Orthologs

Human Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Homo sapiens (Human) (32)

Hsap\SLC25A20

13 of 14

Yes

4 of 14

4 of 14

3 of 14

3 of 14

3 of 14

3 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Model Organism Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Rattus norvegicus (Norway rat) (17)

Rnor\Slc25a20

13 of 14

Yes

4 of 14

4 of 14

3 of 14

3 of 14

2 of 14

2 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Mus musculus (laboratory mouse) (18)

Mmus\Slc25a20

13 of 14

Yes

4 of 14

4 of 14

3 of 14

3 of 14

2 of 14

2 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Xenopus tropicalis (Western clawed frog) (24)

Xtro\slc25a20

11 of 13

Yes

Xtro\slc25a20l

7 of 13

Yes

3 of 13

3 of 13

3 of 13

3 of 13

3 of 13

2 of 13

2 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Yes

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Danio rerio (Zebrafish) (31)

Drer\slc25a20

13 of 14

Yes

Drer\si:dkey-150i13.2

11 of 14

Yes

4 of 14

3 of 14

3 of 14

3 of 14

3 of 14

3 of 14

3 of 14

2 of 14

Drer\si:dkey-178e17.1

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Caenorhabditis elegans (Nematode, roundworm) (24)

Cele\dif-1

14 of 14

Yes

4 of 14

4 of 14

3 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Anopheles gambiae (African malaria mosquito) (18)

Agam\AgaP_AGAP006104

12 of 12

Yes

5 of 12

4 of 12

2 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

Arabidopsis thaliana (thale-cress) (33)

Atha\BOU

11 of 13

Yes

Atha\MBAC1

5 of 13

Yes

4 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Saccharomyces cerevisiae (Brewer's yeast) (19)

Scer\CRC1

13 of 13

Yes

4 of 13

4 of 13

3 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Yes

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Schizosaccharomyces pombe (Fission yeast) (8)

Spom\SPAC4G9.20c

6 of 12

Yes

Spom\SPBC29A3.11c

3 of 12

Yes

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

Escherichia coli (enterobacterium) (0)

Other Organism Orthologs (via OrthoDB)

Data provided directly from OrthoDB:colt. Refer to their site for version information.

Paralogs

Downloads

Download All DIOPT Paralogs

Paralogs (via DIOPT v9.1)

Gene Symbol

Score

Source

Alignment

Drosophila melanogaster (Fruit fly) (44)

10 of 13

7 of 13

5 of 13

4 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

GC1

2 of 13

GC2

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

sea

2 of 13

2 of 13

2 of 13

2 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Human Disease Associations

FlyBase Human Disease Model Reports

Disease Ontology (DO) Annotations

Models Based on Experimental Evidence ( 0 )

Allele

Disease

Evidence

References

Potential Models Based on Orthology ( 1 )

Human Ortholog

Disease

Evidence

References

SLC25A20; solute carrier family 25 member 20

model of carnitine-acylcarnitine translocase deficiency

IEA

(FlyBase, 2019-)

Modifiers Based on Experimental Evidence ( 0 )

Allele

Disease

Interaction

References

Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)

Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.

Homo sapiens (Human)

Gene name

Score

OMIM

OMIM Phenotype

DO term

Complementation?

Transgene?

SLC25A20; solute carrier family 25 member 20

13 of 14

613698

CARNITINE-ACYLCARNITINE TRANSLOCASE DEFICIENCY; CACTD

carnitine-acylcarnitine translocase deficiency

SLC25A29; solute carrier family 25 member 29

4 of 14

615064

SLC25A45; solute carrier family 25 member 45

4 of 14

610825

SLC25A2; solute carrier family 25 member 2

3 of 14

608157

SLC25A15; solute carrier family 25 member 15

3 of 14

603861

HYPERORNITHINEMIA-HYPERAMMONEMIA-HOMOCITRULLINURIA SYNDROME; HHHS

ornithine translocase deficiency

SLC25A47; solute carrier family 25 member 47

3 of 14

609911

SLC25A48; solute carrier family 25 member 48

3 of 14

616150

Functional Complementation Data

Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.

Interactions

Summary of Physical Interactions

Interaction Browsers

View in FlyBase Interactions Browser View in MIST tool (external link)

Please see the Physical Interaction reports below for full details

protein-protein

Physical Interaction

Assay

References

colt - CG9922

experimental knowledge based

(Guruharsha et al., 2011)

colt - Mpcp2

experimental knowledge based

(Guruharsha et al., 2011)

Summary of Genetic Interactions

Interaction Browsers

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

External Data

Linkouts

BioGRID - A database of protein and genetic interactions.

59693

DroID - A comprehensive database of gene and protein interactions.

FBgn0019830

MIST (protein-protein) - An integrated Molecular Interaction Database

33470

Pathways

Signaling Pathways (FlyBase)

Metabolic Pathways

FlyBase

External Links

Reactome Metabolic Pathways - An open-source, open access, manually curated and peer-reviewed metabolic pathway database.

Carnitine metabolism

External Data

Linkouts

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

Carnitine metabolism

Class of Gene

nuclear_gene

protein_coding_gene

retrogene

(dos Santos, 2014, Pan and Zhang, 2009, Langille and Clark, 2007)

Genomic Location and Detailed Mapping Data

Chromosome (arm)

Recombination map

2-7

Cytogenetic map

23A5-23A5

Sequence location

2L:2,768,590..2,770,069 [-]

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

23A5-23A5

Limits computationally determined from genome sequence between P{EP}EP832 and P{PZ}oho23B⁰³⁵⁷⁵

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

23A-23A

(Mechler, 1997.4.10)

23A-23A

(determined by in situ hybridisation)

(Hartenstein et al., 1997)

Experimentally Determined Recombination Data

Location

2-7

(FlyBase, 2016)

2-6.2

(Comeron et al., 2012)

Left of (cM)

Right of (cM)

Notes

Stocks and Reagents

Stocks (10)

Aberrations including deletions of this gene Aberrations including duplications of this gene

Bloomington

51798

y¹ v¹; P{TRiP.HMC03354}attP40

26993

y¹ w^*; P{EP}colt^G2414

78634

y¹ sc^* v¹ sev²¹; P{TOE.GS01869}attP40

10897

3057R-1

HMC03354

y¹ v¹; P{TRiP.HMC03354}attP40/CyO

2LG-0951

y² VhaAC39-1^cho-1 v¹; P{U6-colt.NIG.sgRNA.1}attP40/CyO

2LG-3028

y² VhaAC39-1^cho-1 v¹; P{U6-colt.NIG.sgRNA.2}attP40/CyO

VDRC

v106089

P{KK107449}VIE-260B

v47965

w¹¹¹⁸; P{GD841}v47965

Genomic Clones (9)

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones (230)

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequenced

BDGP DGC clones

GM13207

Other clones

DPiM_GM13207

Drosophila Genomics Resource Center cDNA clones

For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

FBgn0019830

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi and Array Information

Linkouts

DRSC - Results frm RNAi screens

FBgn0019830

Antibody Information

Laboratory Generated Antibodies

Commercially Available Antibodies

Cell Line Information

Publicly Available Cell Lines

Other Stable Cell Lines

Other Comments

S2 cells treated with dsRNA generated against this gene show reduced phagocytosis of Candida albicans compared to untreated cells.

(Stroschein-Stevenson et al., 2006)

The product of colt is presumed to be involved in a mitochondrial metabolic process and can be critically required in specific morphogenetic mechanisms.

(Hartenstein et al., 1997)

Embryonic development can take place without zygotic colt function giving rise to larvae with incomplete filling of the tracheal system with gas. If development proceeds further colt function specifically affects morphogenesis of the wings, by altering the differentiation of the wing epithelial cells and by blocking the unfolding and expansion of the wings after eclosion.

(Hartenstein et al., 1997)

Relationship to Other Genes

Source for database merge of

Additional comments

The colt gene may have been derived from the CG5646 gene by retroposition.

(Pan and Zhang, 2009)

The colt gene may have been derived from the CG3476 gene by retroposition.

(Langille and Clark, 2007)

Nomenclature History

Source for database identify of

Nomenclature comments

Etymology

Synonyms and Secondary IDs (7)

Reported As

Symbol Synonym

CACT

(Carillo et al., 2020, Manzo et al., 2018)

CG3057

(National Institute of Genetics Fly Stocks, 2022-, Carillo et al., 2020, Curcio et al., 2020, Zhou et al., 2019, Caizzi et al., 2016, Cammarato et al., 2011, Ni et al., 2010.12.1, Keleman et al., 2009.8.5, Pan and Zhang, 2009, Pan and Zhang, 2009)

Colt

(Curcio et al., 2020)

Name Synonyms

Carnitine Acyl-Carnitine Translocase

(Carillo et al., 2020)

collapsed trachea

congested-like trachea

(Manzo et al., 2018, Cammarato et al., 2011, Buffin and Gho, 2010, Hartenstein et al., 1997)

Secondary FlyBase IDs

Datasets (0)

Study focus (0)

Experimental Role

Project

Project Type

Title

Study result (0)

Result

Result Type

Title

External Crossreferences and Linkouts ( 44 )

Sequence Crossreferences

NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

33470

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.

RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

UniProt/GCRP - The gene-centric reference proteome (GCRP) provides a 1:1 mapping between genes and UniProt accessions in which a single 'canonical' isoform represents the product(s) of each protein-coding gene.

Q9VQG4

UniProt/Swiss-Prot - Manually annotated and reviewed records of protein sequence and functional information

Q9VQG4

Other crossreferences

AlphaFold DB - AlphaFold provides open access to protein structure predictions for the human proteome and other key proteins of interest, to accelerate scientific research.

Q9VQG4

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

33470/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0019830

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0019830

FlyMine - An integrated database for Drosophila genomics

FBgn0019830

InterPro - A database of protein families, domains and functional sites

KEGG Genes - Molecular building blocks of life in the genomic space.

dme:Dmel_CG3057

MARRVEL_MODEL - MARRVEL (model organism gene)

33470

Linkouts

BioGRID - A database of protein and genetic interactions.

59693

Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones

FBgn0019830

DroID - A comprehensive database of gene and protein interactions.

FBgn0019830

DRSC - Results frm RNAi screens

FBgn0019830

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

colt_1

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0019830

FlyCyc Genes - Genes from a BioCyc PGDB for Dmel

FBGN0019830

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG3057

Flygut - An atlas of the Drosophila adult midgut

FBgn0019830

FlyMet - A comprehensive tissue-specific metabolomics resource for Drosophila.

FBgn0019830

iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)

TC004690

MIST (protein-protein) - An integrated Molecular Interaction Database

33470

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

Carnitine metabolism

Reactome Metabolic Pathways - An open-source, open access, manually curated and peer-reviewed metabolic pathway database.

Carnitine metabolism

References (68)

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