FlyBase Gene Report: Dmel\lute

General Information

Symbol

Dmel\lute

Species

D. melanogaster

Name

lute

Annotation Symbol

CG43226

Feature Type

protein_coding_gene

FlyBase ID

FBgn0262871

Gene Model Status

Current

Stock Availability

14 publicly available

Gene Summary

lute (lute) encodes a protein involved in neurogenesis. [Date last reviewed: 2019-09-19] (FlyBase Gene Snapshot)

All Summaries

Gene Snapshot
Alliance
Auto summary
Interactive Fly

Key Links

Genomic Location

Cytogenetic map

90A3-90A5

Sequence location

3R:17,379,944..17,390,265 [+]

Recombination map

3-60

RefSeq locus

NT_033777 REGION:17379944..17390265

Sequence

Get Decorated FASTA

Genomic Maps

JBrowse

Other Genome Views

The following external sites may use different assemblies or annotations than FlyBase.

Function

Gene Ontology (GO) Annotations (2 terms)

Molecular Function (0 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (0 terms)

Biological Process (1 term)

Terms Based on Experimental Evidence (1 term)

CV Term

Evidence

References

involved_in neurogenesis

inferred from mutant phenotype

(Bury et al., 2008)

Terms Based on Predictions or Assertions (1 term)

CV Term

Evidence

References

involved_in neurogenesis

inferred from biological aspect of ancestor with PANTHER:PTN001229949

(GO Reference Genome Project, 2011-)

Cellular Component (1 term)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (1 term)

CV Term

Evidence

References

is_active_in cytosol

inferred from biological aspect of ancestor with PANTHER:PTN001229949

(GO Reference Genome Project, 2011-)

Gene Group (FlyBase)

Protein Family (UniProt)

Protein Signatures (InterPro)

Summaries

Gene Snapshot

lute (lute) encodes a protein involved in neurogenesis. [Date last reviewed: 2019-09-19]

Gene Model and Products

Number of Transcripts

Number of Unique Polypeptides

Please see the JBrowse view of Dmel\lute for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)

Isoform displayed:

Pfam protein domains

InterPro name

classification

start

end

Protein Domains (via SMART)

Isoform displayed:

SMART protein domains

InterPro name

classification

start

end

Structure

Protein 3D structure (Predicted by AlphaFold) (AlphaFold entry A0A0B4KGU2)

If you don't see a structure in the viewer, refresh your browser.

Model Confidence:

Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

Experimentally Determined Structures

Crossreferences

Comments on Gene Model

Stop-codon suppression (UGA) postulated; FBrf0216884.

Gene model reviewed during 5.44

Gene model reviewed during 5.49

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Assoc. CDS (aa)

lute-RA

FBtr0083435

NM_142361

3537

677

lute-RB

FBtr0306209

NM_001260220

3623

727

lute-RC

FBtr0306210

NM_001260221

3707

727

lute-RD

FBtr0330037

NM_001275734

3537

735

Additional Transcript Data and Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

UniProt

RefSeq ID

GenBank

lute-PA

FBpp0082876

72.0

677

5.97

FBpp0297318

78.1

727

5.11

FBpp0297319

78.1

727

5.11

FBpp0303070

79.0

735

6.40

A0A0B4KGU2

NP_001262663

AGB96043

Polypeptides with Identical Sequences

The group(s) of polypeptides indicated below share identical sequence to each other.

727 aa isoforms: lute-PB, lute-PC

Additional Polypeptide Data and Comments

Reported size (kDa)

Comments

External Data

Crossreferences

InterPro - A database of protein families, domains and functional sites

Linkouts

Sequences Consistent with the Gene Model

Nucleotide / Polypeptide Records

UniProt

Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\lute using the Feature Mapper tool.

External Data

Crossreferences

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

Linkouts

Expression Data

Testis-specificity index

The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

-0.85

Transcript Expression

in situ

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage 1 -- 3

organism | intense | ubiquitous

Comment: maternally deposited

(Fisher et al., 2012)

embryonic stage 4 -- 6

organism | ubiquitous

(Fisher et al., 2012)

embryonic stage 7 -- 8

organism | ubiquitous

(Fisher et al., 2012)

embryonic stage 9 -- 10

organism | ubiquitous

(Fisher et al., 2012)

embryonic stage 11 -- 12

organism | ubiquitous

(Fisher et al., 2012)

embryonic stage 13 -- 16

organism | ubiquitous

(Fisher et al., 2012)

embryonic stage 14

larval peripheral nervous system

(Bury et al., 2008)

embryonic stage 16

larval central nervous system

(Bury et al., 2008)

Additional Descriptive Data

lute is broadly expressed in embryos. Cluster of PNS cells express lute at embryonic stage 14. Expression is elevated in the CNS at stage 16.

(Bury et al., 2008)

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

JBrowse - Visual display of RNA-Seq signals

View Dmel\lute in JBrowse

RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region

View exonic expression by developmental stage for Dmel\lute

View exonic expression by tissue for Dmel\lute

Bulk Downloads

RNA-Seq RPKM values for all genes

Reference

See Gelbart and Emmert, 2013 for analysis details and data files for all genes.

Developmental Proteome: Life Cycle

Developmental Proteome: Embryogenesis

External Data and Images

Linkouts

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0262871

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

42089/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0262871

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0262871

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG5319

Images

FlyBase Wiki

Image Based Resources

Alleles, Insertions, Transgenic Constructs, and Aberrations

Classical and Insertion Alleles ( 8 )

For All Classical and Insertion Alleles Show

Other relevant insertions

Transgenic Constructs ( 7 )

For All Alleles Carried on Transgenic Constructs Show

Transgenic constructs containing/affecting coding region of lute

Transgenic constructs containing regulatory region of lute

Aberrations (Deficiencies and Duplications) ( 0 )

Inferred from experimentation ( 0 )

Inferred from location ( 4 )

Variants

Variant Molecular Consequences

Alleles Representing Disease-Implicated Variants

Phenotypes

For more details about a specific phenotype click on the relevant allele symbol.

Lethality

Allele

lethal | recessive

lute^D12

lethal - all die before end of first instar larval stage | recessive

lute^KG02251

lethal - all die before end of pupal stage, with Scer\GAL4^pnr-MD237

lute^GD8297

viable

lute^D17

viable, with Dcr-2^UAS.cDa, Scer\GAL4^elav.PLu

viable, with Scer\GAL4^Mef2.PR

lute^GD11604

viable, with Scer\GAL4^pnr-MD237

lute^GD11604

viable, with Scer\GAL4^tin.CΔ4

lute^GD11604

Other Phenotypes

Allele

abnormal neuroanatomy | late embryonic stage

lute^KG02251

some die during first instar larval stage | recessive

lute^KG02251

some die during pupal stage, with Scer\GAL4^pnr-MD237

lute^GD8297

Phenotype manifest in

Allele

larval longitudinal connective | late embryonic stage

lute^KG02251

presumptive embryonic/larval nervous system

lute^KG02251

symmetrical commissure | late embryonic stage

lute^KG02251

Orthologs

Downloads

Download All DIOPT Orthologs

Human Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Homo sapiens (Human) (61)

Hsap\BTBD3

13 of 14

Yes

Hsap\BTBD6

13 of 14

Yes

Hsap\BTBD2

4 of 14

Yes

Hsap\BTBD1

3 of 14

Yes

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

Yes

Hsap\KLHL11

2 of 14

Yes

2 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Model Organism Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Rattus norvegicus (Norway rat) (49)

Rnor\Btbd3

14 of 14

Yes

Rnor\Btbd6

13 of 14

Yes

Rnor\Btbd1

3 of 14

Yes

Rnor\Abtb2

2 of 14

Rnor\Btbd2

2 of 14

Yes

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Mus musculus (laboratory mouse) (60)

Mmus\Btbd3

13 of 14

Yes

Mmus\Btbd6

13 of 14

Yes

Mmus\Btbd1

3 of 14

Yes

Mmus\Btbd2

3 of 14

Yes

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

Mmus\Tdpoz8

1 of 14

Xenopus tropicalis (Western clawed frog) (37)

Xtro\btbd3

11 of 13

Yes

Xtro\btbd6

9 of 13

Yes

Xtro\btbd1

2 of 13

Yes

Xtro\btbd2

2 of 13

Yes

Xtro\ifngr1

2 of 13

Yes

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Yes

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Yes

Danio rerio (Zebrafish) (54)

Drer\btbd3b

14 of 14

Yes

Drer\btbd6b

13 of 14

Yes

Drer\btbd3a

12 of 14

Yes

Drer\btbd6a

12 of 14

Yes

Drer\btbd2a

4 of 14

Yes

Drer\LOC555499

3 of 14

Yes

Drer\abtb2a

2 of 14

Drer\btbd9

2 of 14

Drer\kbtbd4

2 of 14

Yes

Drer\klhl11

2 of 14

Yes

2 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

Drer\si:ch211-63p21.8

1 of 14

Drer\si:ch211-256e16.3

1 of 14

Drer\si:dkey-260j18.2

1 of 14

Drer\spopla

1 of 14

Drer\spoplb

1 of 14

Caenorhabditis elegans (Nematode, roundworm) (69)

Cele\tag-30

6 of 14

Yes

Cele\bath-42

2 of 14

Cele\W07A12.4

2 of 14

Cele\bath-1

1 of 14

Yes

Cele\bath-2

1 of 14

Yes

Cele\bath-3

1 of 14

Cele\bath-4

1 of 14

Yes

Cele\bath-5

1 of 14

Yes

Cele\bath-7

1 of 14

Yes

Cele\bath-9

1 of 14

Yes

Cele\bath-10

1 of 14

Cele\bath-13

1 of 14

Cele\bath-15

1 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

Yes

Cele\bath-25

1 of 14

Cele\bath-27

1 of 14

Yes

Cele\bath-29

1 of 14

Yes

Cele\bath-30

1 of 14

Cele\bath-31

1 of 14

Yes

Cele\bath-33

1 of 14

Yes

Cele\bath-35

1 of 14

Yes

Cele\bath-36

1 of 14

Yes

Cele\bath-38

1 of 14

Yes

Cele\bath-39

1 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

Yes

Cele\bath-46

1 of 14

Cele\bath-47

1 of 14

Yes

Cele\btb-2

1 of 14

Yes

Cele\btb-5

1 of 14

Yes

Cele\btb-6

1 of 14

Yes

Cele\btb-8

1 of 14

Yes

Cele\btb-9

1 of 14

Yes

Cele\btb-10

1 of 14

Yes

Cele\btb-11

1 of 14

Yes

Cele\btb-12

1 of 14

Yes

Cele\btb-14

1 of 14

Yes

Cele\btb-16

1 of 14

Yes

Cele\btb-17

1 of 14

Yes

Cele\btb-18

1 of 14

Yes

Cele\btb-19

1 of 14

Yes

Cele\btb-20

1 of 14

Yes

Cele\btb-22

1 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

Yes

Cele\F22G12.4

1 of 14

Cele\F25H9.2

1 of 14

Yes

Cele\hpo-9

1 of 14

Cele\K08E4.7

1 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

Cele\rpm-1

1 of 14

Cele\sdz-18

1 of 14

Yes

Cele\sdz-28

1 of 14

Cele\spop-1

1 of 14

Cele\Y43E12A.3

1 of 14

Yes

Cele\Y54F10AM.11

1 of 14

Yes

Cele\Y59E9AL.8

1 of 14

Yes

Anopheles gambiae (African malaria mosquito) (28)

Agam\AgaP_AGAP004234

7 of 12

Yes

Agam\AgaP_AGAP000475

2 of 12

Yes

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

Yes

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

Arabidopsis thaliana (thale-cress) (19)

Atha\AT1G01640

2 of 13

Yes

Atha\AT2G30600

2 of 13

Yes

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Yes

Atha\BT3

1 of 13

Atha\BT4

1 of 13

Yes

Atha\BT5

1 of 13

Yes

Saccharomyces cerevisiae (Brewer's yeast) (0)

Schizosaccharomyces pombe (Fission yeast) (0)

Escherichia coli (enterobacterium) (0)

Other Organism Orthologs (via OrthoDB)

Data provided directly from OrthoDB:lute. Refer to their site for version information.

Paralogs

Downloads

Download All DIOPT Paralogs

Paralogs (via DIOPT v9.1)

Gene Symbol

Score

Source

Alignment

Drosophila melanogaster (Fruit fly) (22)

4 of 13

3 of 13

3 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

dbo

1 of 13

gprs

1 of 13

hiw

1 of 13

Keap1

1 of 13

kel

1 of 13

klhl10

1 of 13

KLHL18

1 of 13

Lztr1

1 of 13

rdx

1 of 13

Human Disease Associations

FlyBase Human Disease Model Reports

Disease Ontology (DO) Annotations

Models Based on Experimental Evidence ( 0 )

Allele

Disease

Evidence

References

Potential Models Based on Orthology ( 0 )

Human Ortholog

Disease

Evidence

References

Modifiers Based on Experimental Evidence ( 0 )

Allele

Disease

Interaction

References

Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)

Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.

Homo sapiens (Human)

Gene name

Score

OMIM

OMIM Phenotype

DO term

Complementation?

Transgene?

BTBD3; BTB domain containing 3

13 of 14

615566

BTBD6; BTB domain containing 6

13 of 14

BTBD2; BTB domain containing 2

4 of 14

608531

BTBD1; BTB domain containing 1

3 of 14

608530

Functional Complementation Data

Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.

Interactions

Summary of Physical Interactions

Interaction Browsers

Summary of Genetic Interactions

Interaction Browsers

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

External Data

Linkouts

DroID - A comprehensive database of gene and protein interactions.

FBgn0262871

Pathways

Signaling Pathways (FlyBase)

Metabolic Pathways

FlyBase

External Links

External Data

Linkouts

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

Class of Gene

gene_with_stop_codon_read_through

(Jungreis et al., 2011)

nuclear_gene

protein_coding_gene

Genomic Location and Detailed Mapping Data

Chromosome (arm)

Recombination map

3-60

Cytogenetic map

90A3-90A5

Sequence location

3R:17,379,944..17,390,265 [+]

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

90A3-90A5

Limits computationally determined from genome sequence between P{EP}CG5208^EP562&P{EP}Dad^EP3196 and P{PZ}l(3)07882⁰⁷⁸⁸²;

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

3-60

(FlyBase, 2016)

3-59.6

(Comeron et al., 2012)

Left of (cM)

Right of (cM)

Notes

Stocks and Reagents

Stocks (14)

Aberrations including deletions of this gene Aberrations including duplications of this gene

Bloomington

51154

y¹ v¹; P{TRiP.GLC01741}attP2

39011

y¹ sc^* v¹ sev²¹; P{TRiP.HMS01929}attP40

34277

y¹ w^*; Mi{MIC}Brf^MI02107/TM3, Sb¹ Ser¹

15099

y¹; ry⁵⁰⁶ P{SUPor-P}lute^KG02251/TM3, Sb¹ Ser¹

43025

y¹ w^*; Mi{MIC}Brf^MI05815 lute^MI05815/TM3, Sb¹ Ser¹

10979

5319R-3

5319R-4

HMJ21632

y¹ v¹; P{TRiP.HMJ21632}attP40/CyO

HMS01929

y¹ sc^* v¹ sev²¹; P{TRiP.HMS01929}attP40

VDRC

v108082

P{KK100355}VIE-260B

v34987

w¹¹¹⁸; P{GD11604}v34987

More stocks available...

Genomic Clones (25)

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones (63)

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequenced

BDGP DGC clones

LD01876

Other clones

Drosophila Genomics Resource Center cDNA clones

For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

FBgn0262871

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi and Array Information

Linkouts

Antibody Information

Laboratory Generated Antibodies

Commercially Available Antibodies

Cell Line Information

Publicly Available Cell Lines

Other Stable Cell Lines

Other Comments

Area matching Drosophila EST AA264635.

(Davies, 2001.3.15)

Relationship to Other Genes

Source for database merge of

Source for merge of: CG5319 anon-WO0118547.289

(FlyBase, 1996-)

Source for merge of: lute CG14333

(FlyBase Genome Annotators, 2011)

Additional comments

Annotations CG5319 and CG14333 merged as CG43226 in release 5.34 of the genome annotation.

(FlyBase Genome Annotators, 2011)

Source for merge of CG5319 anon-WO0118547.289 was sequence comparison ( date:051113 ).

(FlyBase, 1996-)

Nomenclature History

Source for database identify of

Source for identity of: lute CG5319

(Bury et al., 2008)

Nomenclature comments

Etymology

The gene is named "lute" based on the mutant phenotype; there is weaker fasciculation of each of the six Fas2-positive longitudinal bundles in mutant embryos, giving the appearance of the Arabian string instrument called a "lute".

(Bury et al., 2008)

Synonyms and Secondary IDs (5)

Reported As

Symbol Synonym

CG14333

(Bury et al., 2008)

CG43226

(FlyBase Genome Annotators, 2011, Ni et al., 2010.12.1)

CG5319

(Kumar et al., 2016, Japanese National Institute of Genetics, 2012.5.21, Jungreis et al., 2011, Keleman et al., 2009.8.5, Pan and Zhang, 2009, Bury et al., 2008, Mack et al., 2006)

anon-WO0118547.289

lute

(Gene Disruption Project members, 2016-)

Name Synonyms

lute

Secondary FlyBase IDs

FBgn0038501
FBgn0062117
FBgn0038500

Datasets (0)

Study focus (0)

Experimental Role

Project

Project Type

Title

Study result (0)

Result

Result Type

Title

External Crossreferences and Linkouts ( 50 )

Sequence Crossreferences

NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

42089

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.

RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

UniProt/GCRP - The gene-centric reference proteome (GCRP) provides a 1:1 mapping between genes and UniProt accessions in which a single 'canonical' isoform represents the product(s) of each protein-coding gene.

A0A0B4KGU2

UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information

Other crossreferences

AlphaFold DB - AlphaFold provides open access to protein structure predictions for the human proteome and other key proteins of interest, to accelerate scientific research.

A0A0B4KGU2

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0262871

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

42089/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0262871

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0262871

InterPro - A database of protein families, domains and functional sites

KEGG Genes - Molecular building blocks of life in the genomic space.

dme:Dmel_CG43226

MARRVEL_MODEL - MARRVEL (model organism gene)

42089

Linkouts

Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones

FBgn0262871

DroID - A comprehensive database of gene and protein interactions.

FBgn0262871

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FlyCyc Genes - Genes from a BioCyc PGDB for Dmel

FBGN0262871

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG5319

iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)

TC009240

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

References (34)

The following external sites may use different assemblies or annotations than FlyBase.

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