FB2026_02 , released June 18, 2026
Human Disease Model Report: Cornelia de Lange syndrome 2
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General Information
Name
Cornelia de Lange syndrome 2
FlyBase ID
FBhh0001587
Disease Ontology Term
Parent Disease
Overview

This report describes Cornelia de Lange syndrome 2, a subtype of Cornelia de Lange syndrome. The human gene implicated is SMC1A, which encodes structural maintenance of chromosomes 1A, a member of the cohesin multiprotein complex required for sister chromatid cohesion. SMC1A is also associated with developmental and epileptic encephalopathy 85 (MIM:301044). There is one high-scoring fly ortholog, Dmel\SMC1, for which multiple genetic reagents, including an amorphic allele, RNAi-targeting constructs, and alleles caused by insertional mutagenesis have been generated.

The human gene SMC1A has not yet been introduced into flies.

Ubiquitous RNAi knockdown of Dmel\SMC1 resulted in an increase in startle response time, an increase in spontaneous locomotor activity, and a decrease in night sleep.

[updated July 2024 by FlyBase; FBrf0222196]

Disease Summary Information
Parent Disease Summary: Cornelia de Lange syndrome
Symptoms and phenotype

Cornelia de Lange syndrome (CDLS) is a multisystem malformation syndrome recognized primarily on the basis of characteristic facial dysmorphism, in association with prenatal and postnatal growth retardation, mental retardation and, in many cases, upper limb anomalies. However, there is wide clinical variability in this disorder, with milder phenotypes that may be difficult to ascertain on the basis of physical features (summary by Rohatgi et al., 2010; pubmed:20583156). [from MIM:122470; 2017.09.08]

Specific Disease Summary: Cornelia de Lange syndrome 2
OMIM report

[CORNELIA DE LANGE SYNDROME 2; CDLS2](https://omim.org/entry/300590)

Human gene(s) implicated

[STRUCTURAL MAINTENANCE OF CHROMOSOMES 1A; SMC1A](https://omim.org/entry/300040)

Symptoms and phenotype

See general description of Cornelia de Lange syndrome.

Genetics

Cornelia de Lange syndrome-2 (CDLS2) is caused by mutation in the SMC1A gene, which encodes a subunit of the cohesin complex, on chromosome Xp11. [from MIM:300590; 2024.07.02]

Cellular phenotype and pathology
Molecular information

Proper cohesion of sister chromatids is a prerequisite for the correct segregation of chromosomes during cell division. The cohesin multiprotein complex is required for sister chromatid cohesion. This complex is composed partly of two structural maintenance of chromosomes (SMC) proteins, SMC3 and either SMC1A or the SMC1B. Most of the cohesin complexes dissociate from the chromosomes before mitosis, although those complexes at the kinetochore remain. Therefore, the encoded protein is thought to be an important part of functional kinetochores. In addition, this protein interacts with BRCA1 and is phosphorylated by ATM, indicating a potential role for this protein in DNA repair. This gene, which belongs to the SMC gene family, is located in an area of the X-chromosome that escapes X inactivation. [provided by RefSeq, Jul 2013]

External links
Disease synonyms
CDLS2
CDLS, X-linked
congenital muscular hypertrophy-cerebral syndrome
Cornelia de Lange syndrome, X-linked
SMC1A-related Cornelia de Lange syndrome
Ortholog Information
Human gene(s) in FlyBase
    Human gene (HGNC)
    D. melanogaster ortholog (based on DIOPT)
    Comments on ortholog(s)

    Two to one (2 human to 1 Drosophila); SMC1A has one high-scoring Drosophila ortholog, SMC1.

    Other mammalian ortholog(s) used
      D. melanogaster Gene Information (1)
      Gene Snapshot
      Structural maintenance of chromosomes 1 (SMC1) encodes an ATPase that heterodimerizes with the product of SMC3 to interact with the products of vtd and SA1 to form the cohesin ring complex. Cohesin encircles sister chromatids after DNA replication and has multiple roles in the regulation of gene expression and DNA repair. [Date last reviewed: 2019-03-14]
      Gene Groups / Pathways
      Comments on ortholog(s)

      High-scoring ortholog of human SMC1A, SMC1B (1 Drosophila to 2 human).

      Orthologs and Alignments from DRSC
      DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
      Other Genes Used: Viral, Bacterial, Synthetic (0)
        Summary of Physical Interactions (11 groups)
        protein-protein
        Interacting group
        Assay
        References
        ion exchange chromatography, peptide massfingerprinting
        anti tag coimmunoprecipitation, autoradiography
        pull down, Identification by mass spectrometry
        pull down, Identification by mass spectrometry
        anti bait coimmunoprecipitation, western blot
        pull down, autoradiography, anti bait coimmunoprecipitation, western blot
        anti bait coimmunoprecipitation, western blot, pull down, peptide massfingerprinting
        anti bait coimmunoprecipitation, western blot, anti tag coimmunoprecipitation, anti tag western blot
        anti tag coimmunoprecipitation, western blot, anti bait coimmunoprecipitation, anti tag western blot, two hybrid
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, anti tag western blot, anti bait coimmunoprecipitation, Identification by mass spectrometry, western blot
        Alleles Reported to Model Human Disease (Disease Ontology) (2 alleles)
        Models Based on Experimental Evidence ( 2 )
        Modifiers Based on Experimental Evidence ( 0 )
        Allele
        Disease
        Interaction
        References
        Alleles Representing Disease-Implicated Variants
        Genetic Tools, Stocks and Reagents
        Sources of Stocks
        Contact lab of origin for a reagent not available from a public stock center.
        Bloomington Stock Center Disease Page
        Related mammalian, viral, bacterial, or synthetic transgenes
        Allele
        Transgene
        Publicly Available Stocks
        Selected Drosophila transgenes
        Allele
        Transgene
        Publicly Available Stocks
        RNAi constructs available
        Allele
        Transgene
        Publicly Available Stocks
        Selected Drosophila classical alleles
        Allele
        Allele class
        Mutagen
        Publicly Available Stocks
        amorphic allele - molecular evidence
        References (4)