FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Human Disease Model Report: SATB2-associated syndrome
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General Information
Name
SATB2-associated syndrome
FlyBase ID
FBhh0001629
Disease Ontology Term
Parent Disease
Overview

This report describes SATB2-associated syndrome, an autosomal dominant disorder. The gene implicated in this disease is SATB2, which encodes a DNA-binding protein that specifically binds to genomic nuclear matrix attachment regions and participates in transcription regulation and chromatin remodeling. SATB2-associated syndrome shares phenotypes with Glass syndrome, which is caused by a small deletion on chromosome 2q32-q33; SATB2 is located within this region.

There is a single Drosophila gene orthologous to SATB2, dve, for which multiple genetic reagents have been generated, including classical loss-of-function mutations, RNAi-targeting constructs, and overexpression constructs. Dmel\dve is also orthologous to the human gene SATB1.

Animals homozygous for severe loss-of-function mutations of dve typically die during the larval stage. Overexpression of dve causes lethality or severe morphological phenotypes, depending upon expression of the driver.

UAS constructs of the human Hsap\SATB2 have been introduced into flies, including wild-type and variants implicated in this disease; see the 'Disease-Implicated Variants' table below. Overexpression of wild-type Hsap\SATB2 results in lethality or phenotypes similar to those observed for overexpression of Dmel\dve. Overexpression assays have been used to characterize variants associated with SATB2-associated syndrome, allowing categorization as loss-of-function or partial loss-of-function. Effects of three different variants affecting the same protein residue (Gly392) have been compared in the Drosophila system.

[updated Apr. 2025 by FlyBase; FBrf0222196]

Disease Summary Information
Disease Summary: SATB2-associated syndrome
OMIM report

[GLASS SYNDROME; GLASS](https://omim.org/entry/612313)

Human gene(s) implicated

[SPECIAL AT-RICH SEQUENCE-BINDING PROTEIN 2; SATB2](https://omim.org/entry/608148)

Symptoms and phenotype

SATB2-associated syndrome (SAS) is a multisystem disorder in which all affected individuals have developmental delay / intellectual disability that can range from mild to profound but is most commonly moderate to profound. Speech delay and/or absent speech is observed in all affected individuals. Other neurobehavioral manifestations can include jovial or friendly personality, autistic tendencies, agitation or aggressive outbursts, self-injury, impulsivity, hyperactivity, anxiety, difficulty falling asleep or maintaining sleep, and sensory issues. Most affected individuals have hypotonia. [GeneReviews, NBK458647; 2025.04.16]

Genetics

Glass syndrome (GLASS) is caused by heterozygous interstitial deletion on chromosome 2q32-q33. The disorder can also be caused by heterozygous mutation in the SATB2 gene (608148), which is within the Glass syndrome chromosome region. [from MIM:612313; 2025.04.16]

Cellular phenotype and pathology
Molecular information

The SATB2 gene encodes a nuclear matrix DNA-binding protein that specifically binds to genomic nuclear matrix attachment regions and participates in transcription regulation and chromatin remodeling (summary by Leoyklang et al., 2013; pubmed:23925499). [from MIM:608148; 2025.04.16]

External links
Disease synonyms
2q32 deletion syndrome
2q33.1 microdeletion syndrome
chromosome 2q32-q33 deletion syndrome
GLASS
Glass syndrome
SAS
Ortholog Information
Human gene(s) in FlyBase
Human gene (HGNC)
D. melanogaster ortholog (based on DIOPT)
Comments on ortholog(s)

Many to one: 2 human genes to 1 Drosophila gene.

Other mammalian ortholog(s) used
    D. melanogaster Gene Information (1)
    Gene Snapshot
    defective proventriculus (dve) encodes a transcriptional repressor that binds to the K50 site. It is involved in developmental patterning, cell-type specification, and functional differentiation. [Date last reviewed: 2019-03-07]
    Cellular component (GO)
    Gene Groups / Pathways
    Comments on ortholog(s)

    Low-scoring ortholog of human SATB1 and SATB2 (1 Drosophila gene to 2 human).

    Orthologs and Alignments from DRSC
    DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
    Other Genes Used: Viral, Bacterial, Synthetic (0)
      Summary of Physical Interactions (6 groups)
      protein-protein
      Interacting group
      Assay
      References
      anti tag coimmunoprecipitation, peptide massfingerprinting
      two hybrid array
      two hybrid array
      Alleles Reported to Model Human Disease (Disease Ontology) (6 alleles)
      Models Based on Experimental Evidence ( 4 )
      Modifiers Based on Experimental Evidence ( 0 )
      Allele
      Disease
      Interaction
      References
      Models Based on Experimental Evidence ( 1 )
      Allele
      Disease
      Evidence
      References
      Modifiers Based on Experimental Evidence ( 1 )
      Alleles Representing Disease-Implicated Variants
      Genetic Tools, Stocks and Reagents
      Sources of Stocks
      Contact lab of origin for a reagent not available from a public stock center.
      Bloomington Stock Center Disease Page
      Related mammalian, viral, bacterial, or synthetic transgenes
      Allele
      Transgene
      Publicly Available Stocks
      Selected Drosophila transgenes
      Allele
      Transgene
      Publicly Available Stocks
      RNAi constructs available
      Allele
      Transgene
      Publicly Available Stocks
      Selected Drosophila classical alleles
      Allele
      Allele class
      Mutagen
      Publicly Available Stocks
      loss of function allele
      CRISPR/Cas9
      loss of function allele
      FLPase
      loss of function allele
      CRISPR/Cas9
      loss of function allele
      CRISPR/Cas9
      References (5)