FlyBase Gene Report: Dmel\RpL11

General Information

Symbol

Dmel\RpL11

Species

D. melanogaster

Name

Ribosomal protein L11

Annotation Symbol

CG7726

Feature Type

protein_coding_gene

FlyBase ID

FBgn0013325

Gene Model Status

Current

Stock Availability

7 publicly available

Gene Summary

Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl-transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome through a tunnel in the LSU and interact with protein factors that function in enzymatic processing, targeting, and the membrane insertion of nascent chains at the exit of the ribosomal tunnel. (UniProt, P46222)

Contribute a Gene Snapshot for this gene.

All Summaries

Alliance
Auto summary
Gene Group
UniProtKB
Interactive Fly

Also Known As

l(2)k16914, L11, DL11

Key Links

Genomic Location

Cytogenetic map

56D7-56D7

Sequence location

2R:19,442,342..19,443,825 [+]

Recombination map

2-89

RefSeq locus

NT_033778 REGION:19442342..19443825

Sequence

Get Decorated FASTA

Genomic Maps

JBrowse

Other Genome Views

The following external sites may use different assemblies or annotations than FlyBase.

Function

Gene Ontology (GO) Annotations (12 terms)

Molecular Function (3 terms)

Terms Based on Experimental Evidence (2 terms)

CV Term

Evidence

References

enables protein binding

inferred from physical interaction with FLYBASE:Fmr1; FB:FBgn0028734

(Ishizuka et al., 2002)

enables structural constituent of ribosome

inferred from high throughput direct assay

(Alonso and Santaren, 2006)

inferred from direct assay

(Anger et al., 2013)

Terms Based on Predictions or Assertions (2 terms)

CV Term

Evidence

References

enables RNA binding

inferred from biological aspect of ancestor with PANTHER:PTN000242048

(GO Reference Genome Project, 2011-)

enables structural constituent of ribosome

traceable author statement

(Marygold et al., 2007)

inferred from biological aspect of ancestor with PANTHER:PTN000242048

(GO Reference Genome Project, 2011-)

inferred from electronic annotation with InterPro:IPR002132, InterPro:IPR020929

(InterPro Project Members, 2004-)

Biological Process (2 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (2 terms)

CV Term

Evidence

References

involved_in cytoplasmic translation

inferred by curator from GO:0022626

(Anger et al., 2013, Alonso and Santaren, 2006)

traceable author statement

(Marygold et al., 2007)

involved_in translation

inferred from biological aspect of ancestor with PANTHER:PTN000242048

(GO Reference Genome Project, 2011-)

inferred from electronic annotation with InterPro:IPR002132, InterPro:IPR020929

(InterPro Project Members, 2004-)

Cellular Component (7 terms)

Terms Based on Experimental Evidence (5 terms)

CV Term

Evidence

References

located_in cytoplasm

inferred from direct assay

(Rugjee et al., 2013)

located_in cytosolic ribosome

inferred from high throughput direct assay

(Alonso and Santaren, 2006)

inferred from direct assay

(Anger et al., 2013)

colocalizes_with nuclear chromosome

inferred from direct assay

(Rugjee et al., 2013)

located_in nucleolus

inferred from direct assay

(Rugjee et al., 2013)

colocalizes_with polytene chromosome puff

inferred from direct assay

(Rugjee et al., 2013)

Terms Based on Predictions or Assertions (2 terms)

CV Term

Evidence

References

part_of cytosolic large ribosomal subunit

traceable author statement

(Marygold et al., 2007)

inferred from biological aspect of ancestor with PANTHER:PTN000242048

(GO Reference Genome Project, 2011-)

located_in ribosome

inferred from electronic annotation with InterPro:IPR002132, InterPro:IPR020929

(InterPro Project Members, 2004-)

Gene Group (FlyBase)

CYTOPLASMIC LARGE RIBOSOMAL SUBUNIT

CYTOPLASMIC LARGE RIBOSOMAL SUBUNIT - TESTIS-SPECIFIC VARIANT

Protein Family (UniProt)

Belongs to the universal ribosomal protein uL5 family. (P46222)

Protein Signatures (InterPro)

Summaries

Gene Group (FlyBase)

CYTOPLASMIC LARGE RIBOSOMAL SUBUNIT -: Cytoplasmic ribosomes are found on the endoplasmic reticulum and in the cytosol. They translate all mRNAs produced from nuclear genes and perform the majority of cellular protein synthesis. Ribosomes are formed by two ribonucleoprotein subunits, large and small. The principle function of the large subunit is to bind tRNA during the synthesis of polypeptides. (Adapted from FBrf0205398.)
CYTOPLASMIC LARGE RIBOSOMAL SUBUNIT - TESTIS-SPECIFIC VARIANT -: Cytoplasmic ribosomes are found on the endoplasmic reticulum and in the cytosol. They translate all mRNAs produced from nuclear genes and perform the majority of cellular protein synthesis. Ribosomes are formed by two ribonucleoprotein subunits, large and small. The principle function of the large subunit is to bind tRNA during the synthesis of polypeptides. Tissue expression data from modENCODE has been used to infer the composition of the cytosolic large ribosomal subunit testis-specific variant. (Adapted from FBrf0205398.)

Protein Function (UniProtKB)

(UniProt, P46222)

Gene Model and Products

Number of Transcripts

Number of Unique Polypeptides

Please see the JBrowse view of Dmel\RpL11 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)

Isoform displayed:

Pfam protein domains

InterPro name

classification

start

end

Protein Domains (via SMART)

Isoform displayed:

SMART protein domains

InterPro name

classification

start

end

Structure

Protein 3D structure (Predicted by AlphaFold) (AlphaFold entry P46222)

If you don't see a structure in the viewer, refresh your browser.

Model Confidence:

Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

Experimentally Determined Structures

Crossreferences

PDB - An information portal to biological macromolecular structures

Comments on Gene Model

Low-frequency RNA-Seq exon junction(s) not annotated.

Gene model reviewed during 5.51

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Assoc. CDS (aa)

RpL11-RA

FBtr0086533

NM_057706

710

184

RpL11-RB

FBtr0340533

NM_001299685

1017

184

Additional Transcript Data and Comments

Reported size (kB)

0.9, 0.8 (northern blot)

(Larochelle and Suter, 1995)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

UniProt

RefSeq ID

GenBank

RpL11-PA

FBpp0085717

21.1

184

10.64

FBpp0309436

21.1

184

10.64

P46222

NP_001286614

AHN56409

Polypeptides with Identical Sequences

The group(s) of polypeptides indicated below share identical sequence to each other.

184 aa isoforms: RpL11-PA, RpL11-PB

Additional Polypeptide Data and Comments

Reported size (kDa)

184 (aa); 21 (kD predicted)

(Larochelle and Suter, 1995)

Comments

External Data

Subunit Structure (UniProtKB)

Component of the large ribosomal subunit (By similarity). Interacts with Fmr1 to form the RNA-induced silencing complex (RISC), a ribonucleoprotein (RNP) complex involved in translation regulation, other components of the complex are RpL5, Rm62, AGO2 and Dcr-1 (PubMed:12368261).

(UniProt, P46222)

Crossreferences

InterPro - A database of protein families, domains and functional sites

PDB - An information portal to biological macromolecular structures

Linkouts

Sequences Consistent with the Gene Model

Nucleotide / Polypeptide Records

UniProt

Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\RpL11 using the Feature Mapper tool.

External Data

Crossreferences

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

RpL11_1

Linkouts

Expression Data

Testis-specificity index

The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

-0.38

Transcript Expression

northern blot

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage -- adult stage

(Larochelle and Suter, 1995)

Additional Descriptive Data

RpL11 transcripts are detected throughout development on northern blots.

(Larochelle and Suter, 1995)

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

mass spectroscopy

Stage

Tissue/Position (including subcellular localization)

Reference

adult stage

adult head

• membrane

(Aradska et al., 2015)

day 7 of adulthood -- day 49 of adulthood

adult heart

(Cammarato et al., 2011)

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Evidence

References

located_in cytoplasm

inferred from direct assay

(Rugjee et al., 2013)

located_in cytosolic ribosome

inferred from high throughput direct assay

(Alonso and Santaren, 2006)

inferred from direct assay

(Anger et al., 2013)

colocalizes_with nuclear chromosome

inferred from direct assay

(Rugjee et al., 2013)

located_in nucleolus

inferred from direct assay

(Rugjee et al., 2013)

colocalizes_with polytene chromosome puff

inferred from direct assay

(Rugjee et al., 2013)

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

JBrowse - Visual display of RNA-Seq signals

View Dmel\RpL11 in JBrowse

RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region

View exonic expression by developmental stage for Dmel\RpL11

View exonic expression by tissue for Dmel\RpL11

Bulk Downloads

RNA-Seq RPKM values for all genes

Reference

See Gelbart and Emmert, 2013 for analysis details and data files for all genes.

Developmental Proteome: Life Cycle

Developmental Proteome: Embryogenesis

External Data and Images

Linkouts

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0013325

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

37235/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0013325

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0013325

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0013325

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG7726

Flygut - An atlas of the Drosophila adult midgut

FBgn0013325

Images

FlyBase Wiki

Image Based Resources

Alleles, Insertions, Transgenic Constructs, and Aberrations

Classical and Insertion Alleles ( 2 )

For All Classical and Insertion Alleles Show

Other relevant insertions

Transgenic Constructs ( 12 )

For All Alleles Carried on Transgenic Constructs Show

Transgenic constructs containing/affecting coding region of RpL11

Transgenic constructs containing regulatory region of RpL11

Aberrations (Deficiencies and Duplications) ( 0 )

Inferred from experimentation ( 0 )

Inferred from location ( 1 )

Dp(2;3)GV-CH321-71K01

Variants

Variant Molecular Consequences

Alleles Representing Disease-Implicated Variants

Phenotypes

For more details about a specific phenotype click on the relevant allele symbol.

Lethality

Allele

lethal

RpL11^k16914

lethal, with Scer\GAL4^pnr-MD237

RpL11^GD8662

lethal | pupal stage, with Scer\GAL4^pnr-MD237

RpL11^GD8662

lethal | recessive

RpL11^k16914

lethal - all die during larval stage, with Scer\GAL4^Mef2.PR

RpL11^GD8662

partially lethal, with Scer\GAL4^tin.CΔ4

RpL11^GD8662

Other Phenotypes

Allele

abnormal pain response | adult stage, with Dcr-2^UAS.cDa, Scer\GAL4^elav.PLu

RpL11^GD8662

some die during pupal stage, with Scer\GAL4^tin.CΔ4

RpL11^GD8662

Phenotype manifest in

Allele

Orthologs

Downloads

Download All DIOPT Orthologs

Human Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Homo sapiens (Human) (1)

Hsap\RPL11

14 of 14

Yes

Model Organism Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Rattus norvegicus (Norway rat) (2)

Rnor\Rpl11

14 of 14

Yes

Rnor\LOC689496

6 of 14

Yes

Mus musculus (laboratory mouse) (5)

Mmus\Rpl11

11 of 14

Yes

Mmus\LOC115489947

2 of 14

Yes

Mmus\Gm5093

1 of 14

Yes

Mmus\Gm6745

1 of 14

Yes

Mmus\Gm48909

1 of 14

Yes

Xenopus tropicalis (Western clawed frog) (1)

Xtro\rpl11

7 of 13

Yes

Danio rerio (Zebrafish) (1)

Drer\rpl11

14 of 14

Yes

Caenorhabditis elegans (Nematode, roundworm) (2)

Cele\rpl-11.1

14 of 14

Yes

Cele\rpl-11.2

14 of 14

Yes

Anopheles gambiae (African malaria mosquito) (1)

Agam\AgaP_AGAP011173

12 of 12

Yes

Arabidopsis thaliana (thale-cress) (5)

Atha\AT3G58700

13 of 13

Yes

Atha\AT5G45775

13 of 13

Yes

Atha\RPL16A

13 of 13

Yes

Atha\RPL16B

13 of 13

Yes

Atha\AT4G01310

5 of 13

Yes

Saccharomyces cerevisiae (Brewer's yeast) (3)

Scer\RPL11A

13 of 13

Yes

Scer\RPL11B

13 of 13

Yes

Scer\MRPL7

4 of 13

Yes

Schizosaccharomyces pombe (Fission yeast) (3)

Spom\rpl1101

12 of 12

Yes

Spom\rpl1102

12 of 12

Yes

Spom\mrpl7

4 of 12

Yes

Escherichia coli (enterobacterium) (1)

Ecol\rplE

8 of 11

Yes

Other Organism Orthologs (via OrthoDB)

Data provided directly from OrthoDB:RpL11. Refer to their site for version information.

Paralogs

Downloads

Download All DIOPT Paralogs

Paralogs (via DIOPT v9.1)

Gene Symbol

Score

Source

Alignment

Drosophila melanogaster (Fruit fly) (0)

Human Disease Associations

FlyBase Human Disease Model Reports

Disease Ontology (DO) Annotations

Models Based on Experimental Evidence ( 0 )

Allele

Disease

Evidence

References

Potential Models Based on Orthology ( 1 )

Human Ortholog

Disease

Evidence

References

RPL11; ribosomal protein L11

model of Diamond-Blackfan anemia 7

IEA

(FlyBase, 2019-)

Modifiers Based on Experimental Evidence ( 0 )

Allele

Disease

Interaction

References

Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)

Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.

Homo sapiens (Human)

Gene name

Score

OMIM

OMIM Phenotype

DO term

Complementation?

Transgene?

RPL11; ribosomal protein L11

14 of 14

604175

DIAMOND-BLACKFAN ANEMIA 7; DBA7

Diamond-Blackfan anemia 7

Functional Complementation Data

Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.

Interactions

Summary of Physical Interactions

Interaction Browsers

View in FlyBase Interactions Browser View in MIST tool (external link)

Please see the Physical Interaction reports below for full details

protein-protein

Physical Interaction

Assay

References

RpL11 - Fmr1

pull down, autoradiography, anti tag coimmunoprecipitation, anti tag western blot, peptide massfingerprinting

(Ishizuka et al., 2002)

RpL11 - Rack1

cosedimentation, electron microscopy

(Anger et al., 2013)

RpL11 - RpL10

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL10Ab

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL12

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL13

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL13A

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL14

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL15

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL17

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL18

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL18A

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL19

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL21

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL22

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL23

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL23A

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL24

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL26

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL27

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL27A

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL28

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL29

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL3

cosedimentation, Identification by mass spectrometry, electron microscopy, anti tag coimmunoprecipitation, western blot

(Villa et al., 2024, Anger et al., 2013)

RpL11 - RpL30

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL31

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL32

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL34a

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL35

cosedimentation, electron microscopy

(Anger et al., 2013)

RpL11 - RpL35A

cosedimentation, electron microscopy

(Anger et al., 2013)

RpL11 - RpL36

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL36A

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL37-1

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL37A

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL38

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL39

cosedimentation, electron microscopy

(Anger et al., 2013)

RpL11 - RpL4

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL40

cosedimentation, electron microscopy

(Anger et al., 2013)

RpL11 - RpL41

cosedimentation, electron microscopy

(Anger et al., 2013)

RpL11 - RpL5

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL6

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL7

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL7A

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL8

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpL9

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpLP0

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpLP1

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpLP2

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpS10a

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpS11

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpS12

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpS13

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpS14a

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpS14b

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpS15

cosedimentation, Identification by mass spectrometry, electron microscopy, bimolecular fluorescence complementation, fluorescence microscopy

(Al-Jubran et al., 2013, Anger et al., 2013)

RpL11 - RpS15Aa

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpS16

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpS17

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpS18

cosedimentation through density gradient, bimolecular fluorescence complementation, fluorescence microscopy, cosedimentation, Identification by mass spectrometry, electron microscopy

(Singh et al., 2020, Al-Jubran et al., 2013, Anger et al., 2013)

RpL11 - RpS19a

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpS2

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpS20

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpS21

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpS23

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpS24

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpS25

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpS26

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpS27

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpS27A

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpS28b

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpS29

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpS3

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpS30

cosedimentation, electron microscopy

(Anger et al., 2013)

RpL11 - RpS3A

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpS4

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpS5a

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpS6

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpS7

anti tag coimmunoprecipitation, western blot, cosedimentation, Identification by mass spectrometry, electron microscopy

(Villa et al., 2024, Anger et al., 2013)

RpL11 - RpS8

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - RpS9

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - eEF2

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - sta

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpL11 - vig2

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RNA-protein

Physical Interaction

Assay

References

RpL11 - 18SrRNA

cosedimentation, electron microscopy

(Anger et al., 2013)

RpL11 - 28SrRNA

cosedimentation, electron microscopy

(Anger et al., 2013)

RpL11 - 2SrRNA

cosedimentation, electron microscopy

(Anger et al., 2013)

RpL11 - 5.8SrRNA

cosedimentation, electron microscopy

(Anger et al., 2013)

RpL11 - 5SrRNA

cosedimentation, electron microscopy

(Anger et al., 2013)

Summary of Genetic Interactions

Interaction Browsers

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

External Data

Subunit Structure (UniProtKB)

(UniProt, P46222 )

Linkouts

BioGRID - A database of protein and genetic interactions.

62897

DroID - A comprehensive database of gene and protein interactions.

FBgn0013325

MIST (protein-protein) - An integrated Molecular Interaction Database

37235

Pathways

Signaling Pathways (FlyBase)

Metabolic Pathways

FlyBase

External Links

External Data

Linkouts

KEGG Pathways - A collection of manually drawn pathway maps representing knowledge of molecular interaction, reaction and relation networks.

Ribosome

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

Class of Gene

nuclear_gene

protein_coding_gene

Genomic Location and Detailed Mapping Data

Chromosome (arm)

Recombination map

2-89

Cytogenetic map

56D7-56D7

Sequence location

2R:19,442,342..19,443,825 [+]

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

56D7-56D7

Limits computationally determined from genome sequence between P{lacW}hts^k06121 and P{lacW}l(2)k00705^k00705&P{lacW}mei-W68^k05603

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

56D-56D

(Larochelle, 1994.10.7)

56D5-56D6

(determined by in situ hybridisation)

(Spradling et al., 1999)

56D-56D

(determined by in situ hybridisation)

(Larochelle and Suter, 1995)

56D5-56D6

(BDGP Project Members, 1994-1999)

Experimentally Determined Recombination Data

Location

2-89

(FlyBase, 2016)

2-94.7

(Comeron et al., 2012)

(Larochelle, 1994.10.7)

Left of (cM)

mei-W68

(McKim, 1998.3.10)

Right of (cM)

Notes

Stocks and Reagents

Stocks (7)

Aberrations including deletions of this gene Aberrations including duplications of this gene

Bloomington

11208

y¹ w^67c23; P{lacW}RpL11^k16914/CyO

77319

y¹ sc^* v¹ sev²¹; P{TOE.GS01929}attP40

83766

y¹ sc^* v¹ sev²¹; P{TKO.GS03497}attP40

FlyORF

F001152

M{UAS-RpL11.ORF.3xHA}ZH-86Fb

7726R-1

v101731

v45426

w¹¹¹⁸; P{GD8662}v45426

Genomic Clones (18)

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones (164)

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequenced

BDGP DGC clones

Other clones

Drosophila Genomics Resource Center cDNA clones

For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

FBgn0013325

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi and Array Information

Linkouts

DRSC - Results frm RNAi screens

FBgn0013325

Antibody Information

Laboratory Generated Antibodies

Commercially Available Antibodies

Cell Line Information

Publicly Available Cell Lines

Other Stable Cell Lines

Other Comments

Haploinsufficient locus.

(Cook et al., 2012)

RNAi screen using dsRNA made from templates generated with primers directed against this gene results in aberrantly short, monopolar spindles when assayed in S2 cells. This phenotype can be observed when the screen is performed with or without Cdc27 dsRNA.

(Goshima et al., 2007)

Likely Minute gene.

(Marygold et al., 2007)

RpL11 lies in a gap in deletion coverage.

(Marygold et al., 2007)

RNAi generated by PCR using primers directed to this gene causes a cell growth and viability phenotype when assayed in Kc167 and S2R⁺ cells.

(Boutros et al., 2004)

An RpL11 cDNA has been cloned and sequenced.

(Larochelle and Suter, 1995)

Relationship to Other Genes

Source for database merge of

Source for merge of: RpL11 l(2)k16914

(Palmer et al., 1999)

Source for merge of: RpL11 BcDNA:LD17235

(FlyBase, 1996-)

Additional comments

"RpL11" likely corresponds to "M(2)56CD".

(Marygold et al., 2007)

Source for merge of RpL11 BcDNA:LD17235 was a shared cDNA ( date:020730 ).

(FlyBase, 1996-)

Nomenclature History

Source for database identify of

Source for identity of: RpL11 CG7726

(Milshina, 1999.11)

Nomenclature comments

Etymology

Synonyms and Secondary IDs (15)

Reported As

Symbol Synonym

BcDNA:LD17235

CG7726

(Kolkhof et al., 2017, Rosa-Ferreira et al., 2015, Fukuoh et al., 2014, Costa et al., 2013, Schertel et al., 2013, Jaspers et al., 2012, Cammarato et al., 2011, Kim et al., 2010, Müller et al., 2010, Keleman et al., 2009.8.5, Marygold et al., 2007, Huang et al., 2005)

DL11

(Rugjee et al., 2013, Molnar et al., 2003, Larochelle and Suter, 1995)

EST A

(Palmer et al., 1999)

L11

(Al-Jubran et al., 2013, Carthew, 2002, Ishizuka et al., 2002)

(Anger et al., 2013)

RPL11

(Chen et al., 2025, Rosby et al., 2009)

Rp L11

(Alonso and Santaren, 2006)

chr2R:14957112..14957299

(Will et al., 2013)

l(2)k16914

(Rugjee et al., 2013, Palmer et al., 1999, Spradling et al., 1999, McKim, 1998.3.10, McKim and Hayashi-Hagihara, 1998, BDGP Project Members, 1994-1999)

Name Synonyms

60S ribosomal protein L11

(Costa et al., 2013)

Ribosomal protein L11

(Jaspers et al., 2012, Cammarato et al., 2011, Ashburner and Marygold, 2004.7.2)

ribosomal protein DL11

(Larochelle, 1994.10.7)

ribosomal protein L11

(Sen and Cox, 2016)

Secondary FlyBase IDs

FBgn0021801
FBgn0062462

Datasets (0)

Study focus (0)

Experimental Role

Project

Project Type

Title

Study result (0)

Result

Result Type

Title

External Crossreferences and Linkouts ( 55 )

Sequence Crossreferences

NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

37235

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.

RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

UniProt/GCRP - The gene-centric reference proteome (GCRP) provides a 1:1 mapping between genes and UniProt accessions in which a single 'canonical' isoform represents the product(s) of each protein-coding gene.

P46222

UniProt/Swiss-Prot - Manually annotated and reviewed records of protein sequence and functional information

P46222

UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information

A0A0B4LGZ5

Other crossreferences

AlphaFold DB - AlphaFold provides open access to protein structure predictions for the human proteome and other key proteins of interest, to accelerate scientific research.

P46222

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0013325

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

37235/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0013325

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0013325

FlyMine - An integrated database for Drosophila genomics

FBgn0013325

InterPro - A database of protein families, domains and functional sites

KEGG Genes - Molecular building blocks of life in the genomic space.

dme:Dmel_CG7726

MARRVEL_MODEL - MARRVEL (model organism gene)

37235

PDB - An information portal to biological macromolecular structures

Linkouts

BioGRID - A database of protein and genetic interactions.

62897

Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones

FBgn0013325

DroID - A comprehensive database of gene and protein interactions.

FBgn0013325

DRSC - Results frm RNAi screens

FBgn0013325

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

RpL11_1

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0013325

FlyCyc Genes - Genes from a BioCyc PGDB for Dmel

FBGN0013325

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG7726

Flygut - An atlas of the Drosophila adult midgut

FBgn0013325

FlyMet - A comprehensive tissue-specific metabolomics resource for Drosophila.

FBgn0013325

iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)

TC005792

KEGG Pathways - A collection of manually drawn pathway maps representing knowledge of molecular interaction, reaction and relation networks.

Ribosome

MIST (protein-protein) - An integrated Molecular Interaction Database

37235

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

References (103)

The following external sites may use different assemblies or annotations than FlyBase.

-0.38

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