FB2026_03 , released September 17, 2026
Human Disease Model Report: neurodegenerative disease, SQSTM1-related
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General Information
Name
neurodegenerative disease, SQSTM1-related
FlyBase ID
FBhh0001318
Disease Ontology Term
Parent Disease
OMIM
Overview

A number of neurodegenerative diseases are associated with defects in the sequestosome gene SQSTM1 (MIM:601530), including frontotemporal dementia and/or amyotrophic lateral sclerosis 3 (FTDALS3, FBhh0001319) and neurodegeneration with ataxia, dystonia, and gaze palsy, childhood-onset (NADGP, FBhh0001320). The SQSTM1 gene encodes a scaffolding protein that regulates a variety of biologic processes, including NFKB1 signaling, apoptosis, transcription regulation, and ubiquitin-mediated autophagy. There is a single fly ortholog of SQSTM1, Dmel\ref(2)P, for which classical loss-of-function mutations, RNAi-targeting constructs, and alleles caused by insertional mutagenesis have been generated.

The human SQSTM1 gene has not been introduced into flies.

Using several different drivers and RNAi reagents, knockdown of ref(2)P expression was effected in all neurons, in dopaminergic neurons, or in motor neurons; longevity and locomotor function were assessed over time. Severe progressive locomotor defects were observed in all cases; a modest but significant increase in median lifespan was also observed.

[updated Feb. 2021 by FlyBase; FBrf0222196]

Disease Summary Information
Disease Summary: neurodegenerative disease, SQSTM1-related
OMIM report
Human gene(s) implicated
Symptoms and phenotype
Genetics
Cellular phenotype and pathology
Molecular information

The SQSTM1 gene encodes a scaffolding protein that regulates a variety of biologic processes, including NFKB1 signaling, apoptosis, transcription regulation, and ubiquitin-mediated autophagy (review by Rea et al., 2014; pubmed:24486447). [from MIM:601530; 2021.02.22]

SQSTM1 encodes a multifunctional scaffolding protein that is required for selective autophagy activation by ubiquitinated proteins; it functions as a bridge between polyubiquitinated cargo and autophagosomes. SQSTM1 may play multiple regulatory roles, including regulation of activation of the nuclear factor kappa-β signaling pathway. [Gene Cards, SQSTM1; 21.02.22]

External links
Disease synonyms
Ortholog Information
Human gene(s) in FlyBase
    Human gene (HGNC)
    D. melanogaster ortholog (based on DIOPT)
    Comments on ortholog(s)

    One to one: 1 human gene to 1 Drosophila gene.

    Other mammalian ortholog(s) used
      D. melanogaster Gene Information (1)
      Gene Groups / Pathways
        Comments on ortholog(s)

        Moderate-scoring ortholog of human SQSTM1 (1 Drosophila to 1 human). Dmel\ref(2)P shares 23% identity and 33% similarity with the human gene.

        Orthologs and Alignments from DRSC
        DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
        Other Genes Used: Viral, Bacterial, Synthetic (0)
          Summary of Physical Interactions (49 groups)
          protein-protein
          Interacting group
          Assay
          References
          anti tag coimmunoprecipitation, western blot, pull down, autoradiography
          anti tag coimmunoprecipitation, anti tag western blot, western blot
          anti bait coimmunoprecipitation, anti tag western blot
          anti tag coimmunoprecipitation, western blot, anti tag western blot, proximity ligation assay, fluorescence microscopy, pull down, autoradiography
          anti tag coimmunoprecipitation, anti tag western blot
          anti tag coimmunoprecipitation, anti tag western blot
          anti tag coimmunoprecipitation, anti tag western blot
          anti tag coimmunoprecipitation, anti tag western blot
          anti tag coimmunoprecipitation, anti tag western blot
          anti tag coimmunoprecipitation, peptide massfingerprinting, western blot
          experimental knowledge based
          experimental knowledge based
          experimental knowledge based
          anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based
          experimental knowledge based
          experimental knowledge based
          experimental knowledge based
          experimental knowledge based
          experimental knowledge based
          anti tag coimmunoprecipitation, western blot
          anti tag coimmunoprecipitation, anti tag western blot
          experimental knowledge based
          anti tag coimmunoprecipitation, peptide massfingerprinting
          anti tag coimmunoprecipitation, Identification by mass spectrometry, anti tag western blot
          anti tag coimmunoprecipitation, western blot
          experimental knowledge based
          experimental knowledge based
          experimental knowledge based
          anti tag coimmunoprecipitation, anti tag western blot
          experimental knowledge based
          experimental knowledge based
          enzymatic study, western blot
          anti tag coimmunoprecipitation, anti tag western blot
          experimental knowledge based
          RNA-protein
          Interacting group
          Assay
          References
          anti tag coimmunoprecipitation, quantitative reverse transcription pcr
          anti tag coimmunoprecipitation, quantitative reverse transcription pcr
          anti tag coimmunoprecipitation, quantitative reverse transcription pcr
          anti tag coimmunoprecipitation, quantitative reverse transcription pcr
          anti tag coimmunoprecipitation, quantitative reverse transcription pcr
          anti tag coimmunoprecipitation, quantitative reverse transcription pcr
          anti tag coimmunoprecipitation, quantitative reverse transcription pcr
          anti tag coimmunoprecipitation, quantitative reverse transcription pcr
          anti tag coimmunoprecipitation, quantitative reverse transcription pcr
          anti tag coimmunoprecipitation, quantitative reverse transcription pcr
          anti tag coimmunoprecipitation, quantitative reverse transcription pcr
          anti tag coimmunoprecipitation, quantitative reverse transcription pcr
          anti tag coimmunoprecipitation, quantitative reverse transcription pcr
          anti tag coimmunoprecipitation, quantitative reverse transcription pcr
          anti bait coimmunoprecipitation, quantitative reverse transcription pcr
          Alleles Reported to Model Human Disease (Disease Ontology) (8 alleles)
          Models Based on Experimental Evidence ( 2 )
          Modifiers Based on Experimental Evidence ( 8 )
          Alleles Representing Disease-Implicated Variants
          Genetic Tools, Stocks and Reagents
          Sources of Stocks
          Contact lab of origin for a reagent not available from a public stock center.
          Bloomington Stock Center Disease Page
          Related mammalian, viral, bacterial, or synthetic transgenes
          Allele
          Transgene
          Publicly Available Stocks
          Selected Drosophila transgenes
          Allele
          Transgene
          Publicly Available Stocks
          RNAi constructs available
          Allele
          Transgene
          Publicly Available Stocks
          Selected Drosophila classical alleles
          Allele
          Allele class
          Mutagen
          Publicly Available Stocks
          loss of function allele
          PM hybrid dysgenesis
          loss of function allele
          PM hybrid dysgenesis
          loss of function allele
          PM hybrid dysgenesis
          CRISPR/Cas9
          loss of function allele
          diepoxybutane
          loss of function allele
          diepoxybutane
          loss of function allele
          diepoxybutane
          References (4)