FB2026_02 , released June 18, 2026
Human Disease Model Report: epilepsy, focal, ZFHX3-related
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General Information
Name
epilepsy, focal, ZFHX3-related
FlyBase ID
FBhh0001620
Disease Ontology Term
Parent Disease
OMIM
Overview

This report describes a form of focal epilepsy newly associated with variants in the ZFHX3 gene; this form of focal epilepsy exhibits autosomal recessive inheritance. The ZFHX3 gene encodes a transcription factor involved in myogenic and neuronal development. There is a single Drosophila gene orthologous to ZFHX3, Dmel\zfh2, for which multiple genetic reagents have been generated, including loss-of-function mutations, RNAi-targeting constructs, and overexpression constructs. Dmel\zfh2 is also orthologous to human ZFHX4 and ZFHX2.

A UAS construct of wild-type human Hsap\ZFHX3 gene has been introduced into flies, but has not been characterized.

In Drosophila, adults with RNAi-mediated knockdown of Dmel\zfh2 exhibit seizure-like behaviors in the bang-sensitivity test. Assayed in adult brain, zfh2 knockdown induces increased neural excitability in projection neurons.

[updated Feb. 2025 by FlyBase; FBrf0222196]

Disease Summary Information
Parent Disease Summary: epilepsy, familial focal, with variable foci
Symptoms and phenotype

Familial focal epilepsy with variable foci (FFEVF) is an uncommon form of recurrent seizures (epilepsy) that runs in families. Seizures associated with FFEVF can begin at any time from infancy to adulthood. The seizures are described as focal or partial, which means they begin in one region of the brain and do not cause a loss of consciousness. [MedlinePlus, Familial focal epilepsy with variable foci; 2025.02.19]

Familial focal epilepsy with variable foci (FFEVF) is a form of epilepsy characterized by focal seizures arising from different cortical regions, including the temporal, frontal, parietal, and occipital lobes. A subset of patients have structural brain abnormalities, particularly focal cortical dysplasia (FCD) (summary by Ricos et al., 2016; pubmed:26505888). [from MIM:617118; 2025.02.19]

Specific Disease Summary: epilepsy, focal, ZFHX3-related
OMIM report
Human gene(s) implicated
Symptoms and phenotype

Five patients with variants in the C-terminus/N-terminus presented mild partial epilepsy. The other three patients included one who experienced frequent non-convulsive status epilepticus and two who had early spasms. These three patients had also neurodevelopmental abnormalities and were diagnosed as developmental epileptic encephalopathy (DEE), but achieved seizure-free after antiepileptic-drug treatment without adrenocorticotropic-hormone/steroids.

Genetics

Compound heterozygous ZFHX3 variants were identified in eight unrelated cases of partial (focal) epilepsy (He et al., pubmed:38508705; FBrf0259871).

Cellular phenotype and pathology
Molecular information

ZFHX3 encodes a transcription factor with multiple homeodomains and zinc finger motifs that regulates myogenic and neuronal differentiation. [GeneCards, ZFHX3; 2025.02.21]

External links
Disease synonyms
childhood partial epilepsy, ZFHX3-related
partial (focal) epilepsy, ZFHX3-related
Ortholog Information
Human gene(s) in FlyBase
Human gene (HGNC)
D. melanogaster ortholog (based on DIOPT)
Comments on ortholog(s)

Many to one: 3 human genes to 1 Drosophila gene.

Other mammalian ortholog(s) used
    D. melanogaster Gene Information (1)
    Gene Snapshot
    Zn finger homeodomain 2 (zfh2) encodes a putative transcription factor. Its roles include specification of cell fates and promotion of apoptosis during CNS development, and proximal-distal patterning during wing and leg imaginal disc development. [Date last reviewed: 2019-03-21]
    Cellular component (GO)
    Gene Groups / Pathways
    Comments on ortholog(s)

    High-scoring ortholog of ZFHX3 and ZFHX4; moderate-scoring ortholog of ZFHX2 (1 Drosophila to 3 human).

    Orthologs and Alignments from DRSC
    DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
    Other Genes Used: Viral, Bacterial, Synthetic (0)
      Summary of Physical Interactions (8 groups)
      RNA-RNA
      Interacting group
      Assay
      References
      quantitative reverse transcription pcr
      protein-protein
      Interacting group
      Assay
      References
      anti tag coimmunoprecipitation, peptide massfingerprinting
      Alleles Reported to Model Human Disease (Disease Ontology) (2 alleles)
      Models Based on Experimental Evidence ( 1 )
      Allele
      Disease
      Evidence
      References
      Modifiers Based on Experimental Evidence ( 1 )
      Allele
      Disease
      Interaction
      References
      Alleles Representing Disease-Implicated Variants
      Genetic Tools, Stocks and Reagents
      Sources of Stocks
      Contact lab of origin for a reagent not available from a public stock center.
      Bloomington Stock Center Disease Page
      Related mammalian, viral, bacterial, or synthetic transgenes
      Allele
      Transgene
      Publicly Available Stocks
      Selected Drosophila transgenes
      Allele
      Transgene
      Publicly Available Stocks
      RNAi constructs available
      Allele
      Transgene
      Publicly Available Stocks
      Selected Drosophila classical alleles
      Allele
      Allele class
      Mutagen
      Publicly Available Stocks
      loss of function allele
      P-element activity
      References (3)