FlyBase Aberration Report: Dmel\Df(3L)BSC388

General Information

Symbol

Df(3L)BSC388

Species

D. melanogaster

Name

FlyBase ID

FBab0045202

Feature type

chromosomal_deletion

Computed Breakpoints include

[66A8-66A8];[66B11-66B11];

Features within 66A8--66B11

Genomic Maps

JBrowse

Sequence coordinates

3L:7,650,414..7,650,414 (Df(3L)BSC388:bk1)

(Bloomington Drosophila Stock Center, 2008.8.7)

3L:8,191,187..8,191,187 (Df(3L)BSC388:bk2)

(Bloomington Drosophila Stock Center, 2008.8.7)

Member of large scale dataset(s)

Dfs_BSC_set2

A set of ~800 largely isogenic deficiency stocks created by FLP-induced recombination between FRT-carrying transgenic insertions; molecularly defined deletion endpoints correspond to initial location of the progenitor insertions. Designed to fill gaps in deletion coverage and breakpoint placement; also used to replace older available deficiencies that have not been molecularly mapped.

(Cook et al., 2012)

Nature of Aberration

Cytological Order

Progenitor

PBac{RB}e03262

(Christensen et al., 2007.10.29)

P{XP}d03852

(Christensen et al., 2007.10.29)

Mutagen

FLPase

(Christensen et al., 2007.10.29)

Class of aberration (relative to wild type)

chromosomal_deletion

(FlyBase, 2007)

Class of aberration (relative to progenitor)

chromosomal_deletion

(Christensen et al., 2007.10.29)

Breakpoints

66A8;66B11

(FlyBase Curators, 2008)

Causes alleles

Carries alleles

Transposon Insertions

P+PBac{XP5.RB3}BSC388

(Christensen et al., 2007.10.29)

Formalized genetic data

Genetic mapping information

Comments

Breakpoint from FlyBase's release 5 sequence location of progenitor insertion.

(Bloomington Drosophila Stock Center, 2008.8.7)

Comments on Cytology

The cytological breakpoints of Df(3L)BSC388 predicted from the Release 5 genomic coordinates of the progenitor transposable element

(Christensen et al., 2007.10.29)

insertion sites are 66A8;66B11.

(Christensen et al., 2007.10.29)

Sequence Crossreferences

DDBJ / EMBL / GenBank

DNA sequence

Protein sequence

Gene Deletion and Duplication Data

Genes Deleted / Disrupted

Complementation Data

Completely deleted / disrupted

l(3)psg15

(Sapiro et al., 2013)

pbl

(Christensen et al., 2007.10.29)

Pdp1

(Christensen et al., 2007.10.29)

Sarm

(Osterloh et al., 2012)

Partially deleted / disrupted

Molecular Data

Completely deleted

Partially deleted

Genes NOT Deleted / Disrupted

Complementation Data

Molecular Data

Genes Duplicated

Complementation Data

Completely duplicated

Partially duplicated

Molecular Data

Completely duplicated

Partially duplicated

Genes NOT Duplicated

Complementation Data

Molecular Data

Affected Genes Inferred by Location (71)

Related Comments

Phenotypic Data

In combination with other aberrations

Inferred to overlap with: Df(3L)BSC631.

(Christensen et al., 2008.10.20)

NOT in combination with other aberrations

Stocks (1)

Bloomington

24412

w¹¹¹⁸; Df(3L)BSC388/TM6C, Sb¹ cu¹

Notes on Origin

Discoverer

Balancer / Genotype Variants of the Aberration

Separable Components

Other Comments

The presence of P+PBac{XP5.RB3}BSC388 was verified using the PCR methods and primers described in FBrf0175003, with the substitution of the primer 5'-CCAATGCGTTTATTTCAGGTCACG-3' for the RB3' plus or RB3' minus primer in the Hybrid PCR protocol in the Supplementary Methods.

(Christensen et al., 2007.10.29)

Synonyms and Secondary IDs (2)

Reported As

Symbol Synonym

BSC388

(Osterloh et al., 2012)

Df(3L)BSC388

(El Fissi et al., 2024, Candia et al., 2023, McPherson et al., 2023, Li et al., 2020, Sawyer et al., 2020, Iatsenko et al., 2018, Iatsenko et al., 2016, Freibaum et al., 2015, Nakamura et al., 2013, Sapiro et al., 2013, Cook et al., 2012, Christensen et al., 2008.10.20, FlyBase Curators, 2008, Christensen et al., 2007.10.29, FlyBase, 2007)

Name Synonyms

Secondary FlyBase IDs

References (18)

Report Sections

Open Close