FB2026_02 , released June 18, 2026
FB2026_02 , released June 18, 2026
Human Disease Model Report: neurodevelopmental disorders, FAT4-related
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General Information
Name
neurodevelopmental disorders, FAT4-related
FlyBase ID
FBhh0001080
Disease Ontology Term
Parent Disease
OMIM
Overview

This report describes neurodevelopmental disorders linked to the human gene FAT4. Both disorders covered by this report, Van Maldergem syndrome 2 (FBhh0001081, MIM:612411, DOID:0080586) and Hennekam lymphangiectasia-lymphedema syndrome 2 (FBhh0001082, MIM:616006, DOID:0060366) show autosomal recessive inheritance.

There is a high-ranking ortholog of FAT4 in Drosophila, ft. Many alleles have been generated of ft, including hypomorphs and other loss-of-function alleles, RNAi targeting constructs, and many regulatory region mutants.

The human gene FAT4 has not been introduced into flies. However, some transgenic fusion alleles of ft that contain a portion of human FAT4 have been made, see Pan et al. 2013 (FBrf0220685) for details.

Flies with ft knocked down in the nervous system have a shorter lifespan than wild-type flies, and also perform worse on climbing assays, even as early as day 3 post eclosion. In the retinas of these flies, errors in axonal targeting cause R7 and R8 photoreceptor neurons to fail to project to their correct targets in the medulla. ft-knockdown larvae also have shorter synaptic branches at neuromuscular junctions.

[updated December 2019 by FlyBase; FBrf0222196]

Disease Summary Information
Disease Summary: neurodevelopmental disorders, FAT4-related
OMIM report
Human gene(s) implicated
Symptoms and phenotype

A comparison between the phenotype in HS (Hennekam lymphangiectasia-lymphedema syndrome 2) and VMS (Van Maldergem syndrome 2) shows a considerable overlap between the two entities. Facial resemblance is remarkable, and in both entities cognitive impairment, decreased height, microcephaly and distal limb anomalies (camptodactyly and syndactyly) are common. Most VMS patients with a FAT4 mutation have a severe intellectual disability, although milder intellectual disability does occur. In HS, the cognitive impairment is usually mild to moderate, and in some individuals cognition is even normal. A major sign in HS is the marked lymphatic vessel dysplasia which shows edema especially evident at the distal limbs but regularly is generalized. Lymphedema in HS caused by CCBE1 mutations always is present from birth on, but in HS caused by FAT4 mutations the lymphedema can also start later in life during childhood. Only in a single VMS individual pitting edema of one limb has been reported. In VMS a major sign is periventricular heterotopia. This has been reported once in a HS patient. Other manifestation characteristics for VMS such as tracheal anomalies, small kidneys, and osteoporosis are very uncommon or absent in HS. (Alders et al. 2014 and references therein, pubmed:24913602.)

Genetics

Biallelic mutations in the FAT4 gene have been found in four unrelated families with VMS. However, FAT4 is also linked to the Hennekam lymphangiectasia-lymphedema syndrome (HS), first described in 1989, which shows combined symptoms of congenital lymphedema, intestinal lymphangiectasia (dilation of lymph vessels), facial anomalies and mental retardation. The whole-exome sequencing analyses have revealed a homozygous mutation in the FAT4 gene in the patients with HS. Both HS and VMS show overlapping phenotype including mental retardation and can be allelic to each other. (Adapted from Nakamura et al. 2017 and references therein, FBrf0236068.)

Cellular phenotype and pathology

Planar cell polarity (PCP), the co-ordinated behaviour and polarity of cells within the plane of a tissue, is essential for the appropriate morphogenesis, and ultimately function of organs and tissues. Two clear examples of cellular polarization directed by the Daschous-Fat planar cell polarity pathway in vertebrates have been identified: Dchs1 and Fat4 regulate the orientation of cell divisions within the kidney tubule epithelium, and the collective migration of facial branchiomotor neurons within the hindbrain. (Mao et al. 2016 and references therein, pubmed:27145737.)

Molecular information

FAT4 has 34 N-terminal cadherin repeats, juxtamembrane Ca2+-binding epidermal growth factor (EGF)-like and laminin G (LAM-G)-like domains and a cytoplasmic domain that interacts with several scaffolding and signaling proteins. The truncating FAT4 alleles found in individuals with VMS predict either 1) a protein product lacking four cadherin repeats and the juxtamembrane, transmembrane and cytoplasmic domains (F2), 2) a protein product lacking the most C-terminal 143 residues of the cytoplasmic domain of FAT4, or 3) the entire protein product with the exception of the chain of cadherin repeats (F4). (Adapted from Cappello et al. 2013 and references therein, pubmed:24056717.)

The FAT4 gene encodes a protein that is a member of a large family of protocadherins. DCHS1 (MIM:603057) is another protocadherin that is the ligand for FAT4; FAT4 and DCHS1 form an apically located adhesive complex in the developing brain (summary by Cappello et al. 2013, pubmed:24056717). [from MIM:612411, 2019.7.16]

External links
Disease synonyms
Search term: Hennekam
Search term: Van Maldergem
Ortholog Information
Human gene(s) in FlyBase
    Human gene (HGNC)
    D. melanogaster ortholog (based on DIOPT)
    Comments on ortholog(s)

    1 to 1: one human gene to 1 Drosophila gene.

    Other mammalian ortholog(s) used
      D. melanogaster Gene Information (1)
      Gene Snapshot
      fat (ft) is a tumor suppressor gene that encodes a large cadherin family transmembrane protein. It functions in the Hippo signaling pathway (as a receptor) and the Dachsous-Fat planar cell polarity pathway (as a transmembrane component). [Date last reviewed: 2019-03-07]
      Gene Groups / Pathways
      Comments on ortholog(s)

      Single, high-scoring ortholog of human FAT4.

      Orthologs and Alignments from DRSC
      DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
      Other Genes Used: Viral, Bacterial, Synthetic (0)
        Summary of Physical Interactions (53 groups)
        protein-protein
        Interacting group
        Assay
        References
        anti tag coimmunoprecipitation, western blot, anti tag western blot
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, anti tag western blot, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting, anti tag western blot
        anti bait coimmunoprecipitation, anti tag western blot, colocalization, fluorescence microscopy, inferred by author
        pull down, anti tag western blot, two hybrid
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, anti tag western blot
        colocalization, fluorescence microscopy, inferred by author, anti tag coimmunoprecipitation, western blot, anti tag western blot, pull down
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti bait coimmunoprecipitation, anti tag western blot, colocalization, fluorescence microscopy, inferred by author, affinity technology, enzymatic reaction, ultraviolet-visible spectroscopy, anti tag coimmunoprecipitation, bead aggregation assay
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, western blot, proximity ligation assay, fluorescence microscopy, pull down, anti tag western blot
        anti tag coimmunoprecipitation, anti tag western blot
        anti tag coimmunoprecipitation, anti tag western blot
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, anti tag western blot, enzymatic study, autoradiography
        two hybrid, pull down, anti tag western blot
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting, anti tag western blot
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, anti tag western blot
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, anti tag western blot, peptide massfingerprinting
        two hybrid, pull down, anti tag western blot
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting, anti tag western blot
        anti tag coimmunoprecipitation, anti tag western blot, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting, anti tag western blot
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        Alleles Reported to Model Human Disease (Disease Ontology) (8 alleles)
        Alleles Representing Disease-Implicated Variants
        Genetic Tools, Stocks and Reagents
        Sources of Stocks
        Contact lab of origin for a reagent not available from a public stock center.
        Bloomington Stock Center Disease Page
        Related mammalian, viral, bacterial, or synthetic transgenes
        Allele
        Transgene
        Publicly Available Stocks
        Selected Drosophila transgenes
        Allele
        Transgene
        Publicly Available Stocks
        RNAi constructs available
        Allele
        Transgene
        Publicly Available Stocks
        Selected Drosophila classical alleles
        Allele
        Allele class
        Mutagen
        Publicly Available Stocks
        loss of function allele
        CRISPR/Cas9
        loss of function allele
        CRISPR/Cas9
        loss of function allele
        CRISPR/Cas9
        loss of function allele
        spontaneous
        References (3)