FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Gene: Dmel\stnB
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General Information
Symbol
Dmel\stnB
Species
D. melanogaster
Name
stoned B
Annotation Symbol
CG12473
Feature Type
FlyBase ID
FBgn0016975
Gene Model Status
Stock Availability
Gene Summary
Adapter protein involved in endocytic recycling of synaptic vesicles membranes. May act by mediating the retrieval of synaptotagmin protein Syt from the plasma membrane, thereby facilitating the internalization of multiple synaptic vesicles from the plasma membrane. (UniProt, Q24212)
Contribute a Gene Snapshot for this gene.
Also Known As

stn, stoned, stn-B

Key Links
Genomic Location
Cytogenetic map
Sequence location
Recombination map
1-66
RefSeq locus
NC_004354 REGION:22980722..23004648
Sequence
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
Function
Gene Ontology (GO) Annotations (17 terms)
Molecular Function (3 terms)
Terms Based on Experimental Evidence (2 terms)
CV Term
Evidence
References
inferred from physical interaction with UniProtKB:P21521
inferred from physical interaction with UniProtKB:Q24211
inferred from physical interaction with FLYBASE:Git; FB:FBgn0033539
Terms Based on Predictions or Assertions (1 term)
CV Term
Evidence
References
inferred from biological aspect of ancestor with PANTHER:PTN000055849
Biological Process (8 terms)
Terms Based on Experimental Evidence (5 terms)
CV Term
Evidence
References
inferred from mutant phenotype
inferred from mutant phenotype
inferred from expression pattern
inferred from mutant phenotype
inferred from mutant phenotype
Terms Based on Predictions or Assertions (4 terms)
CV Term
Evidence
References
inferred from biological aspect of ancestor with PANTHER:PTN000242371
involved_in endocytosis
inferred from electronic annotation with InterPro:IPR012320
inferred from electronic annotation with InterPro:IPR017110
inferred from biological aspect of ancestor with PANTHER:PTN002575694
inferred from biological aspect of ancestor with PANTHER:PTN002575694
Cellular Component (6 terms)
Terms Based on Experimental Evidence (4 terms)
CV Term
Evidence
References
inferred from direct assay
inferred from direct assay
inferred from direct assay
located_in synaptic vesicle
inferred from genetic interaction with FLYBASE:Syt1; FB:FBgn0004242
inferred from physical interaction with FLYBASE:Syb; FB:FBgn0003660
inferred from physical interaction with FLYBASE:Csp; FB:FBgn0004179
inferred from physical interaction with FLYBASE:Syt1; FB:FBgn0004242
Terms Based on Predictions or Assertions (3 terms)
CV Term
Evidence
References
inferred from biological aspect of ancestor with PANTHER:PTN000242370
is_active_in cytosol
inferred from biological aspect of ancestor with PANTHER:PTN000242370
is_active_in synaptic vesicle
inferred from biological aspect of ancestor with PANTHER:PTN008307226
Gene Group (FlyBase)
Protein Family (UniProt)
Belongs to the Stoned B family. (Q24212)
Summaries
Gene Group (FlyBase)
STONINS -
The stoned proteins, stoned A and B, are encoded by a dicistronic locus in insecta. They are structurally different, but both contain motifs that are found in adaptor proteins. The stoned proteins are believed to act in synaptic vesicle recycling pathways. (Adapted from FBrf0139751 and FBrf0209527).
Protein Function (UniProtKB)
Adapter protein involved in endocytic recycling of synaptic vesicles membranes. May act by mediating the retrieval of synaptotagmin protein Syt from the plasma membrane, thereby facilitating the internalization of multiple synaptic vesicles from the plasma membrane.
(UniProt, Q24212)
Phenotypic Description (Red Book; Lindsley and Zimm 1992)
stn: stoned (J.C. Hall)
Exists as temperature-sensitive behavioral, temperature-sensitive lethal, and unconditionally lethal alleles. Severe behavioral debilitation is quickly induced by shift of adult stn6 and stn7 from 25 to 29; abnormalities at high temperature include uncoordinated leg and wing movements, with complete paralysis never occurring (e.g., legs still move); stn6 causes some debilitation at 22 (slow movements, occasionally falling over); whereas stn7 is more nearly normal at low temperatures, and can even walk with difficulty at 29; at permissive temperatures, stn (allele unspecified) causes unusual jump response to light-off stimulus, which is more pronounced in combination with w (Kelly, 1983b); associated with this abnormal jumping is an increase in amplitude of light-off transient spike of electroretinogram (ERG); in tests of light-adapted mutant, the jump response, as monitored by recordings from indirect flight muscles, habituates with increasing frequencies of light-off stimulation (Kelly, 1983b); combining stn with tan, which by itself leads to decreased amplitude of ERG on and off transients, leads to loss of anomalous jumping and partial restoration of light-off spike. In biochemical experiments, stn (allele unspecified) found to cause accentuation of in vivo phosphorylation of a protein from adult head synaptosomal fractions that is modified in this way by a cAMP-dependent protein kinase, with such phosphorylation being enhanced by exposure of flies to light, prior to extraction (Kelly, 1983a). A protein, which has same molecular weight as the one noted above, found to be phosphorylated in vitro by a fly-derived Ca2+-calmodulin-dependent protein kinase; stn causes increased levels of in vivo phosphorylation of this material (Kelly, 1983b). The temperature-sensitive lethal allele, stn, leads to brief paralysis, followed by sporadic movements, as a result of mechanical shocking (Homyk and Sheppard, 1977, Genetics 87: 95-104); other abnormalities include abnormally short jump and flight distances, apparent absence of on and off transients in ERG, and lethality when raised at 29. Effects of three of the lethal alleles, stn1, stn11, and stn14, were examined during development for effects on gross anatomy of CNS or PNS; no obvious abnormalities were observed (Perrimon et al., 1989).
Summary (Interactive Fly)

a dicistronic locus encoding two proteins involved in synaptic vesicle recycling

Gene Model and Products
Number of Transcripts
4
Number of Unique Polypeptides
2

Please see the JBrowse view of Dmel\stnB for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)
Isoform displayed:
Pfam protein domains
InterPro name
classification
start
end
Protein Domains (via SMART)
Isoform displayed:
SMART protein domains
InterPro name
classification
start
end
Structure
Protein 3D structure   (Predicted by AlphaFold)   (AlphaFold entry Q24212)

If you don't see a structure in the viewer, refresh your browser.
Model Confidence:
  • Very high (pLDDT > 90)
  • Confident (90 > pLDDT > 70)
  • Low (70 > pLDDT > 50)
  • Very low (pLDDT < 50)

AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

Experimentally Determined Structures
Crossreferences
Comments on Gene Model

Gene model reviewed during 5.53

Gene model reviewed during 5.52

Gene model reviewed during 5.54

Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Assoc. CDS (aa)
FBtr0302020
8270
1262
FBtr0302021
8144
1262
FBtr0344111
8332
1262
FBtr0344466
8207
1241
Additional Transcript Data and Comments
Reported size (kB)

8.4 (northern blot)

Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
UniProt
RefSeq ID
GenBank
FBpp0291230
137.8
1262
4.34
FBpp0291231
137.8
1262
4.34
FBpp0310530
137.8
1262
4.34
FBpp0310837
135.4
1241
4.34
Polypeptides with Identical Sequences

The group(s) of polypeptides indicated below share identical sequence to each other.

1262 aa isoforms: stnB-PE, stnB-PF, stnB-PG
Additional Polypeptide Data and Comments
Reported size (kDa)

1260 (aa); 138 (kD observed)

Comments

Unlike the stnA protein, the mobility of the

stnB protein is not altered under reducing conditions. The stnB

protein shows limited homology to the rat AP50 subunit of the

clathrin-associated protein AP2 complex.

External Data
Subunit Structure (UniProtKB)

Interacts with the second C2 domain of Syt.

(UniProt, Q24212)
Domain

The Asn-Pro-Phe (NPF) motifs, which are found in proteins involved in the endocytic pathway, are known to interact with the EH domain.

(UniProt, Q24212)
Linkouts
Sequences Consistent with the Gene Model
Nucleotide / Polypeptide Records
 
Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\stnB using the Feature Mapper tool.

External Data
Crossreferences
Linkouts
Expression Data
Testis-specificity index

The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

NA

Transcript Expression
northern blot
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
Marker for
 
Subcellular Localization
CV Term
Polypeptide Expression
immunolocalization
Stage
Tissue/Position (including subcellular localization)
Reference
mass spectroscopy
Stage
Tissue/Position (including subcellular localization)
Reference
western blot
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data

The stnB protein is detected at high levels in the adult head, and at much lower levels in the thorax and abdomen.

Marker for
 
Subcellular Localization
CV Term
Evidence
References
inferred from direct assay
inferred from direct assay
inferred from direct assay
located_in synaptic vesicle
inferred from genetic interaction with FLYBASE:Syt1; FB:FBgn0004242
inferred from physical interaction with FLYBASE:Syb; FB:FBgn0003660
inferred from physical interaction with FLYBASE:Csp; FB:FBgn0004179
inferred from physical interaction with FLYBASE:Syt1; FB:FBgn0004242
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools

JBrowse - Visual display of RNA-Seq signals

View Dmel\stnB in JBrowse
RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
Reference
See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
Developmental Proteome: Life Cycle
Developmental Proteome: Embryogenesis
External Data and Images
Linkouts
DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species
EMBL-EBI Single Cell Expression Atlas - Single cell expression across species
FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
Flygut - An atlas of the Drosophila adult midgut
Images
Alleles, Insertions, Transgenic Constructs, and Aberrations
Classical and Insertion Alleles ( 8 )
For All Classical and Insertion Alleles Show
 
Other relevant insertions
Transgenic Constructs ( 10 )
For All Alleles Carried on Transgenic Constructs Show
Transgenic constructs containing/affecting coding region of stnB
Transgenic constructs containing regulatory region of stnB
Aberrations (Deficiencies and Duplications) ( 63 )
Inferred from experimentation ( 63 )
Inferred from location ( 4 )
Variants
Variant Molecular Consequences
Alleles Representing Disease-Implicated Variants
Phenotypes
Orthologs
Human Orthologs (via DIOPT v9.1)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Alignment
Complementation?
Transgene?
Homo sapiens (Human) (12)
9 of 14
Yes
Yes
7 of 14
No
Yes
7 of 14
No
Yes
1 of 14
No
No
1 of 14
No
No
1  
1 of 14
No
No
1 of 14
No
No
1  
1 of 14
No
No
1  
1 of 14
No
No
3  
1 of 14
No
No
1  
1 of 14
No
No
1 of 14
No
No
Model Organism Orthologs (via DIOPT v9.1)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Alignment
Complementation?
Transgene?
Rattus norvegicus (Norway rat) (5)
9 of 14
Yes
Yes
7 of 14
No
Yes
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
Mus musculus (laboratory mouse) (5)
10 of 14
Yes
Yes
7 of 14
No
Yes
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
Xenopus tropicalis (Western clawed frog) (4)
6 of 13
Yes
Yes
1 of 13
No
No
1 of 13
No
No
1 of 13
No
Yes
Danio rerio (Zebrafish) (8)
10 of 14
Yes
Yes
4 of 14
No
Yes
3 of 14
No
Yes
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
Caenorhabditis elegans (Nematode, roundworm) (5)
10 of 14
Yes
Yes
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
Anopheles gambiae (African malaria mosquito) (4)
11 of 12
Yes
Yes
Arabidopsis thaliana (thale-cress) (5)
2 of 13
Yes
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
Saccharomyces cerevisiae (Brewer's yeast) (4)
2 of 13
Yes
Yes
2 of 13
Yes
No
1 of 13
No
No
1 of 13
No
No
Schizosaccharomyces pombe (Fission yeast) (2)
2 of 12
Yes
No
1 of 12
No
No
Escherichia coli (enterobacterium) (0)
Other Organism Orthologs (via OrthoDB)
Data provided directly from OrthoDB:stnB. Refer to their site for version information.
Paralogs
Paralogs (via DIOPT v9.1)
Drosophila melanogaster (Fruit fly) (4)
3 of 13
3 of 13
3 of 13
1 of 13
Human Disease Associations
FlyBase Human Disease Model Reports
    Disease Ontology (DO) Annotations
    Models Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Evidence
    References
    Potential Models Based on Orthology ( 0 )
    Human Ortholog
    Disease
    Evidence
    References
    Modifiers Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Interaction
    References
    Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)
    Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
    Homo sapiens (Human)
    Gene name
    Score
    OMIM
    OMIM Phenotype
    DO term
    Complementation?
    Transgene?
    Functional Complementation Data
    Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
    Interactions
    Summary of Physical Interactions
    Summary of Genetic Interactions
    Interaction Browsers

    Please look at the allele data for full details of the genetic interactions
    Starting gene(s)
    Interaction type
    Interacting gene(s)
    Reference
    Starting gene(s)
    Interaction type
    Interacting gene(s)
    Reference
    External Data
    Subunit Structure (UniProtKB)
    Interacts with the second C2 domain of Syt.
    (UniProt, Q24212 )
    Linkouts
    DroID - A comprehensive database of gene and protein interactions.
    MIST (genetic) - An integrated Molecular Interaction Database
    MIST (protein-protein) - An integrated Molecular Interaction Database
    Pathways
    Signaling Pathways (FlyBase)
    Metabolic Pathways
    FlyBase
    External Links
    External Data
    Linkouts
    Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.
    SignaLink - A signaling pathway resource with multi-layered regulatory networks.
    Class of Gene
    Genomic Location and Detailed Mapping Data
    Chromosome (arm)
    X
    Recombination map
    1-66
    Cytogenetic map
    Sequence location
    FlyBase Computed Cytological Location
    Cytogenetic map
    Evidence for location
    20F3-20F3
    Experimentally Determined Cytological Location
    Cytogenetic map
    Notes
    References
    Experimentally Determined Recombination Data
    Location
    Left of (cM)
    Right of (cM)
    Notes
    Stocks and Reagents
    Stocks (13)
    Genomic Clones (6)
     

    Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

    cDNA Clones (103)
     

    Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

    cDNA clones, fully sequenced
    BDGP DGC clones
    Other clones
      Drosophila Genomics Resource Center cDNA clones

      For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

      cDNA Clones, End Sequenced (ESTs)
      RNAi and Array Information
      Linkouts
      DRSC - Results frm RNAi screens
      Antibody Information
      Laboratory Generated Antibodies
      Commercially Available Antibodies
       
      Cell Line Information
      Publicly Available Cell Lines
       
        Other Stable Cell Lines
         
          Other Comments

          Rescue analysis suggests that the stnB open reading frame (ORF) encodes all vital and important functions of the dicistronic "stn" locus and that the stnA ORF encodes a dispensible protein. However, this interpretation is limited by the absence of a true null for "stn" due to partial rescue of presynaptic stnA protein by transgenically provided stnB protein.

          Neuronal expression of a dicistronic "stn" transcript (encoding both stnA and stnB proteins) is sufficient to rescue various phenotypic defects of "stn" mutants, including lethality and defects in evoked transmitter release and syt protein localisation at the nerve terminals. In addition, neural expression of a monocistronic stnB transgene is sufficient to rescue all these defects. In contrast, neural expression of a monocistronic stnA transgene does not rescue any of the "stn" mutant phenotypes. In addition, "stn" is required for regulating normal growth and morphology of the motor terminal, and this function is also provided by a monocistronic stnB transgene.

          "stn" mutants show a striking decrease in the size of the endo-exo-cycling synaptic vesicle pool and loss of spatial regulation of the vesicular recycling intermediates. Mutant synapses display a significant delay in vesicular membrane retrieval after depolarisation and neurotransmitter release.

          Expression analysis suggests that mutation in the first open reading frame, stnA, of the stoned dicistronic transcript renders the second reading frame, stnB, unreadable.

          The stnA and stnB proteins are essential for the recycling of synaptic vesicle membrane and are required for the proper sorting of the syt gene product during endocytosis.

          The 'stoned' locus produces a dicistronic transcript and encodes two distinct polypeptides. The structure of the protein encoded by the stnB ORF suggests a possible role in membrane trafficking, allowing an interpretation of the interaction seen between temperature sensitive 'stoned' and shi mutants.

          Relationship to Other Genes
          Source for database merge of
          Additional comments

          One or more of the processed transcripts for this gene contain(s) two non-overlapping open reading frames (ORFs). The non-overlapping ORFs are represented by stnA and stnB.

          Nomenclature History
          Source for database identify of
          Nomenclature comments
          Etymology
          Synonyms and Secondary IDs (15)
          Datasets (0)
          Study focus (0)
          Experimental Role
          Project
          Project Type
          Title
          Study result (0)
          Result
          Result Type
          Title
          External Crossreferences and Linkouts ( 47 )
          Sequence Crossreferences
          NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
          GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
          GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
          RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
          UniProt/GCRP - The gene-centric reference proteome (GCRP) provides a 1:1 mapping between genes and UniProt accessions in which a single 'canonical' isoform represents the product(s) of each protein-coding gene.
          UniProt/Swiss-Prot - Manually annotated and reviewed records of protein sequence and functional information
          UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information
          Other crossreferences
          AlphaFold DB - AlphaFold provides open access to protein structure predictions for the human proteome and other key proteins of interest, to accelerate scientific research.
          DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species
          EMBL-EBI Single Cell Expression Atlas - Single cell expression across species
          FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
          FlyMine - An integrated database for Drosophila genomics
          KEGG Genes - Molecular building blocks of life in the genomic space.
          MARRVEL_MODEL - MARRVEL (model organism gene)
          Linkouts
          Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones
          DroID - A comprehensive database of gene and protein interactions.
          DRSC - Results frm RNAi screens
          FlyCyc Genes - Genes from a BioCyc PGDB for Dmel
          Flygut - An atlas of the Drosophila adult midgut
          FlyMet - A comprehensive tissue-specific metabolomics resource for Drosophila.
          iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)
          Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution
          MIST (genetic) - An integrated Molecular Interaction Database
          MIST (protein-protein) - An integrated Molecular Interaction Database
          Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.
          SignaLink - A signaling pathway resource with multi-layered regulatory networks.
          References (80)