FlyBase Gene Report: Dmel\Cyp310a1

CYTOCHROME P450 - CYP3 CLAN -: Cytochrome P450, or CYP genes, constitute one of the largest families of genes, with representatives in virtually all living organisms. P450 enzymes are heme-thiolate proteins best known for their monooxygenase role, catalyzing the transfer of one atom of molecular oxygen to a substrate and reducing the other to water. The CYP3 clan includes D. melanogaster CYP6, 9, 28, 308-310 and 317 family genes. Few CYP3 enzymes have been characterized, though many have been shown to metabolize xenobiotics and plant natural compounds. (Adapted from FBrf0248421.)

Protein Function (UniProtKB)

May be involved in the metabolism of insect hormones and in the breakdown of synthetic insecticides.

(UniProt, Q9VJ71)

Gene Model and Products

Number of Transcripts

Number of Unique Polypeptides

Please see the JBrowse view of Dmel\Cyp310a1 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)

Isoform displayed:

Pfam protein domains

InterPro name

classification

start

end

Protein Domains (via SMART)

Isoform displayed:

SMART protein domains

InterPro name

classification

start

end

Structure

Protein 3D structure (Predicted by AlphaFold) (AlphaFold entry Q9VJ71)

If you don't see a structure in the viewer, refresh your browser.

Model Confidence:

Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

Experimentally Determined Structures

Crossreferences

Comments on Gene Model

Gene model reviewed during 5.44

Gene model reviewed during 5.52

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Assoc. CDS (aa)

Cyp310a1-RA

FBtr0081077

NM_136047

1658

492

Additional Transcript Data and Comments

Reported size (kB)

2 (northern blot)

(Casal and Leptin, 1996)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

UniProt

RefSeq ID

GenBank

Cyp310a1-PA

FBpp0080627

57.1

492

9.84

Q9VJ71

NP_609891

AAF53683

Polypeptides with Identical Sequences

There is only one protein coding transcript and one polypeptide associated with this gene

Additional Polypeptide Data and Comments

Reported size (kDa)

Comments

External Data

Crossreferences

InterPro - A database of protein families, domains and functional sites

Linkouts

Sequences Consistent with the Gene Model

Nucleotide / Polypeptide Records

UniProt

Q9VJ71

Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\Cyp310a1 using the Feature Mapper tool.

External Data

Crossreferences

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

Cyp310a1_1

Linkouts

Expression Data

Testis-specificity index

The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

0.12

Transcript Expression

expression microarray

Stage

Tissue/Position (including subcellular localization)

Reference

wandering third instar larval stage

wing disc

(Mohit et al., 2006)

in situ

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage 1 -- 3

organism

Comment: maternally deposited

(Fisher et al., 2012)

embryonic stage 4 -- 6

anlage in statu nascendi

(Fisher et al., 2012)

anterior endoderm anlage

Comment: anlage in statu nascendi

(Fisher et al., 2012)

head mesoderm anlage

Comment: anlage in statu nascendi

(Fisher et al., 2012)

mesoderm anlage

Comment: anlage in statu nascendi

(Fisher et al., 2012)

trunk mesoderm anlage

Comment: anlage in statu nascendi

(Fisher et al., 2012)

embryonic stage 4 -- 8

head mesoderm anlage

(Chung et al., 2009)

trunk mesoderm anlage

(Chung et al., 2009)

embryonic stage 5

mesoderm anlage

(Casal and Leptin, 1996)

embryonic stage 6 -- 17

mesoderm

(Casal and Leptin, 1996)

embryonic stage 7 -- 8

anterior endoderm anlage

(Fisher et al., 2012)

head mesoderm

(Fisher et al., 2012)

trunk mesoderm

(Fisher et al., 2012)

embryonic stage 9 -- 10

amnioserosa

(Fisher et al., 2012)

anterior endoderm

(Fisher et al., 2012)

head mesoderm

(Fisher et al., 2012)

trunk mesoderm

(Fisher et al., 2012)

embryonic stage 9 -- 16

embryonic/larval tracheal section

(Chung et al., 2009)

yolk nucleus

(Chung et al., 2009)

embryonic/larval fat body

(Chung et al., 2009)

embryonic stage 11 -- 12

fat body/gonad primordium

(Fisher et al., 2012)

plasmatocyte primordium

Comment: reported as plasmatocytes anlage

(Fisher et al., 2012)

yolk nucleus

(Fisher et al., 2012)

embryonic stage 13

embryonic/larval fat body

(Casal and Leptin, 1996)

embryonic stage 13 -- 16

embryonic/larval fat body

(Fisher et al., 2012)

embryonic/larval plasmatocyte

(Fisher et al., 2012)

yolk nucleus

(Fisher et al., 2012)

third instar larval stage

wing disc

(Chung et al., 2009)

wandering third instar larval stage

wing pouch | restricted

Comment: excluded from D/V boundary

(Mohit et al., 2006)

presumptive capitellum | faint

(Mohit et al., 2006)

Additional Descriptive Data

Cyp310a1 transcript is expressed only in non-dorsal/ventral boundary cells of the wing pouch. Very faint expression is observed in the haltere disc.

(Mohit et al., 2006)

Transcripts are expressed in ventral cells of the blastoderm embryo. They continue to be expressed in the mesoderm. In later embryos, expression is observed in the fat body.

(Casal and Leptin, 1996)

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

JBrowse - Visual display of RNA-Seq signals

View Dmel\Cyp310a1 in JBrowse

RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region

View exonic expression by developmental stage for Dmel\Cyp310a1

View exonic expression by tissue for Dmel\Cyp310a1

Bulk Downloads

RNA-Seq RPKM values for all genes

Reference

See Gelbart and Emmert, 2013 for analysis details and data files for all genes.

Developmental Proteome: Life Cycle

Developmental Proteome: Embryogenesis

External Data and Images

Linkouts

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0032693

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

35115/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0032693

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0032693

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0032693

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG10391

Flygut - An atlas of the Drosophila adult midgut

FBgn0032693

Images

FlyExpress - Embryonic expression images (BDGP data)

Show all FlyExpress processed images for Dmel\Cyp310a1

Stages(s) 1-3
Stages(s) 4-6
Stages(s) 7-8
Stages(s) 9-10
Stages(s) 11-12
Stages(s) 13-16

FlyBase Wiki

Image Based Resources

Alleles, Insertions, Transgenic Constructs, and Aberrations

Classical and Insertion Alleles ( 2 )

For All Classical and Insertion Alleles Show

Other relevant insertions

Transgenic Constructs ( 10 )

For All Alleles Carried on Transgenic Constructs Show

Transgenic constructs containing/affecting coding region of Cyp310a1

Transgenic constructs containing regulatory region of Cyp310a1

Aberrations (Deficiencies and Duplications) ( 1 )

Inferred from experimentation ( 1 )

Gene disrupted in

Df(2L)Exel6041

(Ryder, 2004.4.26)

Inferred from location ( 10 )

Variants

Variant Molecular Consequences

Alleles Representing Disease-Implicated Variants

Phenotypes

For more details about a specific phenotype click on the relevant allele symbol.

Phenotype manifest in

Allele

Orthologs

Downloads

Download All DIOPT Orthologs

Human Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Homo sapiens (Human) (14)

Hsap\CYP3A5

5 of 14

Yes

Hsap\CYP3A7-CYP3A51P

5 of 14

Yes

Hsap\CYP3A43

5 of 14

Yes

4 of 14

4 of 14

4 of 14

1 of 14

1 of 14

1 of 14

Yes

Hsap\CYP7B1

1 of 14

Yes

Hsap\CYP8B1

1 of 14

Yes

Hsap\CYP39A1

1 of 14

Yes

Hsap\CYP51A1

1 of 14

Yes

Hsap\PTGIS

1 of 14

Yes

Model Organism Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Rattus norvegicus (Norway rat) (15)

Rnor\Cyp3a9

5 of 14

Yes

Rnor\Cyp3a18

5 of 14

Yes

Rnor\Cyp3a62

5 of 14

Yes

4 of 14

4 of 14

4 of 14

1 of 14

1 of 14

Yes

Rnor\Cyp3a73

1 of 14

Yes

Rnor\Cyp7a1

1 of 14

Yes

Rnor\Cyp7b1

1 of 14

Yes

Rnor\Cyp8b1

1 of 14

Yes

Rnor\Cyp39a1

1 of 14

Yes

Rnor\Cyp51

1 of 14

Yes

Rnor\Ptgis

1 of 14

Yes

Mus musculus (laboratory mouse) (17)

Mmus\Cyp3a11

5 of 14

Yes

Mmus\Cyp3a16

5 of 14

Yes

Mmus\Cyp3a25

5 of 14

Yes

Mmus\Cyp3a41a

5 of 14

Yes

Mmus\Cyp3a41b

5 of 14

Yes

Mmus\Cyp3a44

5 of 14

Yes

Mmus\Cyp3a57

5 of 14

Yes

Mmus\Cyp3a59

5 of 14

Yes

Mmus\Tbxas1

5 of 14

Yes

Mmus\Cyp3a13

4 of 14

Mmus\Cyp7a1

1 of 14

Yes

Mmus\Cyp7b1

1 of 14

Yes

Mmus\Cyp8b1

1 of 14

Yes

Mmus\Cyp27b1

1 of 14

Mmus\Cyp39a1

1 of 14

Yes

Mmus\Cyp51

1 of 14

Yes

Mmus\Ptgis

1 of 14

Yes

Xenopus tropicalis (Western clawed frog) (20)

Xtro\cyp3a4.1

3 of 13

Yes

Xtro\cyp3a4.2

3 of 13

Yes

Xtro\tbxas1

3 of 13

Yes

Xtro\cyp3a5

1 of 13

Yes

Xtro\cyp7a1

1 of 13

Yes

Xtro\cyp7b1

1 of 13

Yes

Xtro\cyp8b1.2

1 of 13

Yes

Xtro\cyp27b1

1 of 13

Xtro\cyp51a1

1 of 13

Yes

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Yes

Xtro\LOC116407844

1 of 13

Xtro\lrrtm3

1 of 13

Yes

1 of 13

1 of 13

1 of 13

1 of 13

Danio rerio (Zebrafish) (17)

Drer\cyp3c3

5 of 14

Yes

Drer\tbxas1

5 of 14

Yes

4 of 14

4 of 14

4 of 14

2 of 14

Yes

Drer\cyp7a1b

1 of 14

Yes

Drer\cyp7a1

1 of 14

Yes

Drer\cyp7b1

1 of 14

Yes

Drer\cyp8b1

1 of 14

Yes

Drer\cyp8b2

1 of 14

Yes

Drer\cyp8b3

1 of 14

Yes

Drer\cyp17a2

1 of 14

Drer\cyp39a1

1 of 14

Yes

Drer\cyp51

1 of 14

Yes

Drer\ptgis

1 of 14

Yes

Drer\si:dkey-91i10.3

1 of 14

Caenorhabditis elegans (Nematode, roundworm) (21)

Cele\cyp-13A3

6 of 14

Yes

Cele\cyp-25A1

6 of 14

Yes

Cele\cyp-25A2

6 of 14

Yes

Cele\cyp-25A3

6 of 14

Yes

Cele\cyp-25A4

6 of 14

Yes

5 of 14

5 of 14

5 of 14

5 of 14

5 of 14

5 of 14

4 of 14

4 of 14

4 of 14

4 of 14

4 of 14

4 of 14

3 of 14

3 of 14

1 of 14

1 of 14

Anopheles gambiae (African malaria mosquito) (52)

Agam\AgaP_AGAP002865

5 of 12

Yes

Agam\AgaP_AGAP002866

5 of 12

Yes

Agam\AgaP_AGAP002868

5 of 12

Yes

Agam\AgaP_AGAP002869

5 of 12

Yes

Agam\AgaP_AGAP002870

5 of 12

Yes

Agam\AgaP_AGAP002894

5 of 12

Yes

Agam\AgaP_AGAP008205

5 of 12

Yes

Agam\AgaP_AGAP008206

5 of 12

Yes

Agam\AgaP_AGAP008207

5 of 12

Yes

Agam\AgaP_AGAP008208

5 of 12

Yes

Agam\AgaP_AGAP008209

5 of 12

Yes

Agam\AgaP_AGAP008212

5 of 12

Yes

Agam\AgaP_AGAP008213

5 of 12

Yes

Agam\AgaP_AGAP008214

5 of 12

Yes

Agam\AgaP_AGAP008217

5 of 12

Yes

Agam\AgaP_AGAP010961

5 of 12

Yes

Agam\AgaP_AGAP012292

5 of 12

Yes

Agam\AgaP_AGAP012293

5 of 12

Yes

Agam\AgaP_AGAP012294

5 of 12

Yes

Agam\AgaP_AGAP012296

5 of 12

Yes

Agam\AgaP_AGAP012850

5 of 12

Yes

Agam\AgaP_AGAP013128

5 of 12

Yes

Agam\CYP6AA1

5 of 12

Yes

Agam\CYP6P4

5 of 12

Yes

Agam\CYP6Z1

5 of 12

Yes

Agam\CYP6Z2

5 of 12

Yes

Agam\CYP9L1

5 of 12

Yes

4 of 12

4 of 12

4 of 12

4 of 12

4 of 12

4 of 12

4 of 12

4 of 12

4 of 12

4 of 12

4 of 12

4 of 12

4 of 12

4 of 12

3 of 12

3 of 12

2 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

Arabidopsis thaliana (thale-cress) (26)

Atha\CYP711A1

3 of 13

Yes

Atha\CYP705A32

2 of 13

Atha\AT3G32047

1 of 13

Atha\CYP51G1

1 of 13

Yes

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Saccharomyces cerevisiae (Brewer's yeast) (1)

Scer\ERG11

1 of 13

Yes

Schizosaccharomyces pombe (Fission yeast) (2)

Spom\erg5

1 of 12

Yes

Spom\erg11

1 of 12

Yes

Escherichia coli (enterobacterium) (0)

Other Organism Orthologs (via OrthoDB)

Data provided directly from OrthoDB:Cyp310a1. Refer to their site for version information.

Paralogs

Downloads

Download All DIOPT Paralogs

Paralogs (via DIOPT v9.1)

Gene Symbol

Score

Source

Alignment

Drosophila melanogaster (Fruit fly) (38)

8 of 13

8 of 13

8 of 13

8 of 13

8 of 13

8 of 13

8 of 13

8 of 13

8 of 13

8 of 13

7 of 13

7 of 13

7 of 13

7 of 13

7 of 13

7 of 13

7 of 13

7 of 13

7 of 13

7 of 13

7 of 13

7 of 13

7 of 13

7 of 13

7 of 13

7 of 13

6 of 13

6 of 13

6 of 13

6 of 13

6 of 13

6 of 13

6 of 13

5 of 13

5 of 13

5 of 13

4 of 13

1 of 13

Human Disease Associations

FlyBase Human Disease Model Reports

Disease Ontology (DO) Annotations

Models Based on Experimental Evidence ( 0 )

Allele

Disease

Evidence

References

Potential Models Based on Orthology ( 1 )

Human Ortholog

Disease

Evidence

References

CYP3A5; cytochrome P450 family 3 subfamily A member 5

model of essential hypertension

IEA

(FlyBase, 2019-)

Modifiers Based on Experimental Evidence ( 0 )

Allele

Disease

Interaction

References

Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)

Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.

Homo sapiens (Human)

Gene name

Score

OMIM

OMIM Phenotype

DO term

Complementation?

Transgene?

CYP3A5; cytochrome P450 family 3 subfamily A member 5

5 of 14

605325

HYPERTENSION, ESSENTIAL

essential hypertension

CYP3A7-CYP3A51P; CYP3A7-CYP3A51P readthrough

5 of 14

CYP3A43; cytochrome P450 family 3 subfamily A member 43

5 of 14

606534

CYP3A4; cytochrome P450 family 3 subfamily A member 4

4 of 14

124010

VITAMIN D-DEPENDENT RICKETS, TYPE 3; VDDR3

CYP3A7; cytochrome P450 family 3 subfamily A member 7

4 of 14

605340

TBXAS1; thromboxane A synthase 1

4 of 14

274180

GHOSAL HEMATODIAPHYSEAL DYSPLASIA; GHDD

Ghosal hematodiaphyseal syndrome

Functional Complementation Data

Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.

Interactions

Summary of Physical Interactions

Interaction Browsers

Summary of Genetic Interactions

Interaction Browsers

View in FlyBase Interactions Browser View in MIST tool (external link)

Please look at the allele data for full details of the genetic interactions

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

dsh

suppressible

Cyp310a1

(Mohit et al., 2006)

dsh

enhanceable

Cyp310a1

(Mohit et al., 2006)

sgg

suppressible

Cyp310a1

(Mohit et al., 2006)

Smox

suppressible

Cyp310a1

(Hevia et al., 2017)

External Data

Linkouts

DroID - A comprehensive database of gene and protein interactions.

FBgn0032693

MIST (genetic) - An integrated Molecular Interaction Database

35115

Pathways

Signaling Pathways (FlyBase)

Metabolic Pathways

FlyBase

External Links

External Data

Linkouts

Class of Gene

nuclear_gene

protein_coding_gene

Genomic Location and Detailed Mapping Data

Chromosome (arm)

Recombination map

2-53

Cytogenetic map

36F8-36F8

Sequence location

2L:18,651,058..18,653,010 [-]

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

36F8-36F8

Limits computationally determined from genome sequence between P{EP}CG10413^EP2164 and P{lacW}l(2)37Db^k16106&P{lacW}Catsup^k05424

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

36F-36F

(Dunkov, 2000.6.29)

Experimentally Determined Recombination Data

Location

2-53

(FlyBase, 2016)

2-53.4

(Comeron et al., 2012)

Left of (cM)

Right of (cM)

Notes

Stocks and Reagents

Stocks (6)

Aberrations including deletions of this gene Aberrations including duplications of this gene

NIG-Fly

10391R-2

P{NIG.10391R}2

HMJ22298

y¹ v¹; P{TRiP.HMJ22298}attP40/CyO

M2L-2273

y¹ w¹¹¹⁸; Cyp310a1^SK1 P{neoFRT}40A/CyO-Tb

M2L-2274

y¹ w¹¹¹⁸; Cyp310a1^SK4 P{neoFRT}40A/CyO-Tb

2LG-1814

y² VhaAC39-1^cho-1 v¹; P{U6-Cyp310a1.NIG.sgRNA}attP40/CyO

VDRC

v100318

P{KK105874}VIE-260B

Genomic Clones (22)

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones (9)

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequenced

BDGP DGC clones

LD44491

Other clones

Drosophila Genomics Resource Center cDNA clones

For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

FBgn0032693

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi and Array Information

Linkouts

DRSC - Results frm RNAi screens

FBgn0032693

Antibody Information

Laboratory Generated Antibodies

Commercially Available Antibodies

Cell Line Information

Publicly Available Cell Lines

Other Stable Cell Lines

Other Comments

Isolated from a subtractive cDNA library enriched in sequences expressed in the mesoderm.

(Casal and Leptin, 1996)

An Cyp310a1 cDNA has been cloned and sequenced. Cyp310a1 is expressed in the early mesoderm.

(Casal and Leptin, 1996)

Relationship to Other Genes

Source for database merge of

Source for merge of: Cyp310a1 anon- EST:CL1d7

(FlyBase, 1996-)

Additional comments

Source for merge of Cyp310a1 anon- EST:CL1d7 was sequence comparison ( date:040623 ).

(FlyBase, 1996-)

Nomenclature History

Source for database identify of

Nomenclature comments

Etymology

Synonyms and Secondary IDs (10)

Reported As

Symbol Synonym

310a1

(Nelson, 2001.2.5)

CG10391

(National Institute of Genetics Fly Stocks, 2023-, National Institute of Genetics Fly Stocks, 2022-, Hevia et al., 2017, Ibrahim et al., 2013, Keleman et al., 2009.8.5, Tomancak et al., 2007, Jacobsen et al., 2006, Mohit et al., 2006, Zimmermann et al., 2006, Ashburner, 2004.6.30)

Cyp310

(Jacobsen et al., 2006)

Cyp310a

(Tomancak et al., 2002)

Cyp310a1

(Cang and Nie, 2020, Scanlan et al., 2020, Christesen et al., 2017, Bischof and FlyORF project members, 2014.6.20, Good et al., 2014, Stefanatos et al., 2013, Japanese National Institute of Genetics, 2012.5.21, Cherbas et al., 2011, Niwa et al., 2011, Ozdemir et al., 2011, Pruteanu-Malinici et al., 2011, Frise et al., 2010, Gilchrist et al., 2008, Jacobsen et al., 2006, Mohit et al., 2006)

(Casal and Leptin, 1996)

anon-EST:CL1d7

(Ashburner, 2004.6.30)

cyp310a1

(Rebeiz et al., 2011)

Name Synonyms

Cyp310a1

Cytochrome P450 310a1

cytochrome P450

(Chung et al., 2009)

Secondary FlyBase IDs

FBgn0019863

Datasets (0)

Study focus (0)

Experimental Role

Project

Project Type

Title

Study result (0)

Result

Result Type

Title

External Crossreferences and Linkouts ( 32 )

Sequence Crossreferences

NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

35115

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.

RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

UniProt/GCRP - The gene-centric reference proteome (GCRP) provides a 1:1 mapping between genes and UniProt accessions in which a single 'canonical' isoform represents the product(s) of each protein-coding gene.

Q9VJ71

UniProt/Swiss-Prot - Manually annotated and reviewed records of protein sequence and functional information

Q9VJ71

Other crossreferences

AlphaFold DB - AlphaFold provides open access to protein structure predictions for the human proteome and other key proteins of interest, to accelerate scientific research.

Q9VJ71

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0032693

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

35115/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0032693

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0032693

FlyMine - An integrated database for Drosophila genomics

FBgn0032693

InterPro - A database of protein families, domains and functional sites

KEGG Genes - Molecular building blocks of life in the genomic space.

dme:Dmel_CG10391

MARRVEL_MODEL - MARRVEL (model organism gene)

35115

Linkouts

Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones

FBgn0032693

DroID - A comprehensive database of gene and protein interactions.

FBgn0032693

DRSC - Results frm RNAi screens

FBgn0032693

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

Cyp310a1_1

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0032693

FlyCyc Genes - Genes from a BioCyc PGDB for Dmel

FBGN0032693

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG10391

Flygut - An atlas of the Drosophila adult midgut

FBgn0032693

MIST (genetic) - An integrated Molecular Interaction Database

35115

References (61)

The following external sites may use different assemblies or annotations than FlyBase.

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