FlyBase Gene Report: Dmel\Pura

General Information

Symbol

Dmel\Pura

Species

D. melanogaster

Name

Puratrophin-1-like

Annotation Symbol

CG33275

Feature Type

protein_coding_gene

FlyBase ID

FBgn0035802

Gene Model Status

Current

Stock Availability

35 publicly available

Gene Summary

Puratrophin-1-like (Pura) encodes a RhoGEF involved in leg morphogenesis, neuron morphogenesis, and locomotor rhythm regulation. [Date last reviewed: 2019-07-11] (FlyBase Gene Snapshot)

All Summaries

Gene Snapshot
Alliance
Auto summary
Gene Group
Interactive Fly

Key Links

Genomic Location

Cytogenetic map

66A6-66A8

Sequence location

3L:7,593,091..7,639,573 [+]

Recombination map

3-21

RefSeq locus

NT_037436 REGION:7593091..7639573

Sequence

Get Decorated FASTA

Genomic Maps

JBrowse

Other Genome Views

The following external sites may use different assemblies or annotations than FlyBase.

Function

Gene Ontology (GO) Annotations (5 terms)

Molecular Function (1 term)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (1 term)

CV Term

Evidence

References

enables guanyl-nucleotide exchange factor activity

inferred from electronic annotation with InterPro:IPR000219

(InterPro Project Members, 2004-)

inferred from sequence or structural similarity with FLYBASE:RhoGEF4; FB:FBgn0035761

(Gene Ontology Curators, 2002-)

Biological Process (4 terms)

Terms Based on Experimental Evidence (3 terms)

CV Term

Evidence

References

involved_in imaginal disc-derived leg morphogenesis

inferred from mutant phenotype

(Greenberg and Hatini, 2011)

involved_in neuron projection morphogenesis

inferred from mutant phenotype

(Petsakou et al., 2015)

involved_in regulation of locomotor rhythm

inferred from genetic interaction with FLYBASE:Rho1; FB:FBgn0014020

(Petsakou et al., 2015)

Terms Based on Predictions or Assertions (1 term)

CV Term

Evidence

References

involved_in positive regulation of Rho protein signal transduction

inferred from sequence or structural similarity with FLYBASE:RhoGEF4; FB:FBgn0035761

(Gene Ontology Curators, 2002-)

Cellular Component (1 term)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (0 terms)

Gene Group (FlyBase)

RHO GUANINE NUCLEOTIDE EXCHANGE FACTORS

Protein Family (UniProt)

Protein Signatures (InterPro)

Summaries

Gene Snapshot

Puratrophin-1-like (Pura) encodes a RhoGEF involved in leg morphogenesis, neuron morphogenesis, and locomotor rhythm regulation. [Date last reviewed: 2019-07-11]

Gene Group (FlyBase)

RHO GUANINE NUCLEOTIDE EXCHANGE FACTORS -: RhoGEFs are Guanine Nucleotide Exchange Factors (GEFs) for Rho family GTPases. They include Dbl-homology domain-containing proteins (the largest family of RhoGEFs) and CZH2 domain/Dock family GEFs. (Adapted from FBrf0190957).

Gene Model and Products

Number of Transcripts

Number of Unique Polypeptides

Please see the JBrowse view of Dmel\Pura for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)

Isoform displayed:

Pfam protein domains

InterPro name

classification

start

end

Protein Domains (via SMART)

Isoform displayed:

SMART protein domains

InterPro name

classification

start

end

Structure

Protein 3D structure (Predicted by AlphaFold) (AlphaFold entry Q7KU89)

If you don't see a structure in the viewer, refresh your browser.

Model Confidence:

Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

Experimentally Determined Structures

Crossreferences

Comments on Gene Model

Low-frequency RNA-Seq exon junction(s) not annotated.

Gene model reviewed during 5.46

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Assoc. CDS (aa)

Pura-RA

FBtr0089850

NM_206294

6438

1904

Pura-RB

FBtr0089849

NM_206295

5584

1428

Pura-RC

FBtr0089851

NM_206293

3253

872

Pura-RD

FBtr0334064

NM_001274604

6257

1898

Additional Transcript Data and Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

UniProt

RefSeq ID

GenBank

Pura-PA

FBpp0088791

210.7

1904

6.07

FBpp0088790

157.7

1428

6.91

FBpp0088792

97.1

872

6.96

FBpp0306189

209.5

1898

5.73

M9PEF7

NP_001261533

AGB94228

Polypeptides with Identical Sequences

None of the polypeptides share 100% sequence identity.

Additional Polypeptide Data and Comments

Reported size (kDa)

Comments

External Data

Crossreferences

InterPro - A database of protein families, domains and functional sites

Linkouts

Sequences Consistent with the Gene Model

Nucleotide / Polypeptide Records

UniProt

Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\Pura using the Feature Mapper tool.

External Data

Crossreferences

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

Linkouts

Expression Data

Testis-specificity index

The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

0.06

Transcript Expression

in situ

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage 1 -- 3

organism

Comment: maternally deposited

(Fisher et al., 2012)

embryonic stage 9 -- 12

midline primordium | subset

(Kearney et al., 2004)

embryonic stage 11

embryonic/larval tracheal section

(Chung et al., 2011)

embryonic/larval salivary gland

(Chung et al., 2011)

embryonic stage 11 -- 12

embryonic optic lobe primordium

(Fisher et al., 2012)

salivary gland body primordium

Comment: reported as salivary gland primordium

(Fisher et al., 2012)

tracheal primordium

(Fisher et al., 2012)

embryonic stage 12

midline glial cell | subset

Comment: high level

(Watson et al., 2011)

embryonic stage 13 -- 16

dorsal head epidermis

(Fisher et al., 2012)

embryonic dorsal epidermis

(Fisher et al., 2012)

embryonic head epidermis

(Fisher et al., 2012)

embryonic leading edge cell

(Fisher et al., 2012)

embryonic ventral epidermis

(Fisher et al., 2012)

ventral midline of embryo

(Fisher et al., 2012)

midline glial cell

Comment: AMG

(Kearney et al., 2004)

third instar larval stage

lamina anlage

(Wang et al., 2013)

larval inner optic anlage

(Wang et al., 2013)

prepupal stage P3

leg | ubiquitous

(Greenberg and Hatini, 2011)

Additional Descriptive Data

Expression in stage P3 pupal leg discs is ubiquitous.

(Greenberg and Hatini, 2011)

Pura is expressed in posterior midline glia but not in anterior midline glia in stage 12 embryos.

(Watson et al., 2011)

Expression is observed in the anterior midline glial cells.

(Kearney et al., 2004)

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

mass spectroscopy

Stage

Tissue/Position (including subcellular localization)

Reference

day 5 of adulthood | male -- day 7 of adulthood | male

spermatozoon

(Dorus et al., 2006)

day 7 of adulthood -- day 49 of adulthood

adult heart

(Cammarato et al., 2011)

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Evidence

References

Expression Deduced from Reporters

Reporter: P{GawB}Pura^NP0057

Stage

Tissue/Position (including subcellular localization)

Reference

adult stage

s-LNv Pdf neuron

• cell body

(Petsakou et al., 2015)

High-Throughput Expression Data

Associated Tools

JBrowse - Visual display of RNA-Seq signals

View Dmel\Pura in JBrowse

RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region

View exonic expression by developmental stage for Dmel\Pura

View exonic expression by tissue for Dmel\Pura

Bulk Downloads

RNA-Seq RPKM values for all genes

Reference

See Gelbart and Emmert, 2013 for analysis details and data files for all genes.

Developmental Proteome: Life Cycle

Developmental Proteome: Embryogenesis

External Data and Images

Linkouts

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0035802

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

2768948/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0035802

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0035802

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0035802

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

Flygut - An atlas of the Drosophila adult midgut

FBgn0035802

Images

FlyExpress - Embryonic expression images (BDGP data)

Show all FlyExpress processed images for Dmel\Pura

Stages(s) 1-3
Stages(s) 4-6
Stages(s) 9-10
Stages(s) 11-12
Stages(s) 13-16

FlyBase Wiki

Image Based Resources

Alleles, Insertions, Transgenic Constructs, and Aberrations

Classical and Insertion Alleles ( 17 )

For All Classical and Insertion Alleles Show

Other relevant insertions

Transgenic Constructs ( 10 )

For All Alleles Carried on Transgenic Constructs Show

Transgenic constructs containing/affecting coding region of Pura

Transgenic constructs containing regulatory region of Pura

Aberrations (Deficiencies and Duplications) ( 0 )

Inferred from experimentation ( 0 )

Inferred from location ( 4 )

Variants

Variant Molecular Consequences

Alleles Representing Disease-Implicated Variants

Phenotypes

For more details about a specific phenotype click on the relevant allele symbol.

Lethality

Allele

lethal, with Scer\GAL4^Mef2.PR

Pura^GD12260

viable

viable, with Dcr-2^UAS.cDa, Scer\GAL4^elav.PLu

viable, with Scer\GAL4^Mef2.PR

viable, with Scer\GAL4^pnr-MD237

viable, with Scer\GAL4^tin.CΔ4

Sterility

Allele

fertile

Other Phenotypes

Allele

abnormal circadian behavior, with Scer\GAL4^P0.5.Pdf

Pura^RNAi.UAS

abnormal neuroanatomy | adult stage, with Scer\GAL4^P0.5.Pdf

Pura^GD12260

abnormal pain response | adult stage, with Dcr-2^UAS.cDa, Scer\GAL4^elav.PLu

Phenotype manifest in

Allele

dendrite, with Scer\GAL4^P0.5.Pdf

Pura^RNAi.UAS

LNd neuron, with Scer\GAL4^P0.5.Pdf

Pura^RNAi.UAS

presynaptic active zone, with Scer\GAL4^P0.5.Pdf

Pura^GD12260

s-LNv Pdf neuron, with Scer\GAL4^P0.5.Pdf

Orthologs

Downloads

Download All DIOPT Orthologs

Human Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Homo sapiens (Human) (59)

Hsap\PLEKHG4B

10 of 14

Yes

Hsap\PLEKHG4

10 of 14

Yes

Hsap\ARHGEF40

4 of 14

Yes

2 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Model Organism Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Rattus norvegicus (Norway rat) (19)

Rnor\Plekhg4

9 of 14

Yes

Rnor\Arhgef40

4 of 14

Yes

2 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Mus musculus (laboratory mouse) (18)

Mmus\Plekhg4

8 of 14

Yes

Mmus\Arhgef40

4 of 14

Yes

2 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Xenopus tropicalis (Western clawed frog) (24)

Xtro\plekhg4

7 of 13

Yes

Xtro\kiaa1755

6 of 13

Yes

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Yes

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Yes

1 of 13

1 of 13

1 of 13

1 of 13

Yes

Xtro\prex1

1 of 13

Yes

Xtro\prex2

1 of 13

Xtro\rasgrf2

1 of 13

Yes

Xtro\sos2

1 of 13

Xtro\trio

1 of 13

Danio rerio (Zebrafish) (25)

Drer\plekhg4

10 of 14

Yes

Drer\quo

9 of 14

Yes

Drer\si:dkey-65j6.2

8 of 14

Yes

Drer\arhgef40

3 of 14

Yes

2 of 14

2 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

Caenorhabditis elegans (Nematode, roundworm) (15)

Cele\unc-89

2 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Anopheles gambiae (African malaria mosquito) (19)

Agam\AgaP_AGAP006188

6 of 12

Yes

2 of 12

2 of 12

2 of 12

1 of 12

Yes

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

Yes

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

Arabidopsis thaliana (thale-cress) (0)

Saccharomyces cerevisiae (Brewer's yeast) (3)

Scer\CDC24

1 of 13

Yes

Scer\ROM1

1 of 13

Yes

Scer\ROM2

1 of 13

Yes

Schizosaccharomyces pombe (Fission yeast) (1)

Spom\scd1

1 of 12

Yes

Escherichia coli (enterobacterium) (0)

Other Organism Orthologs (via OrthoDB)

Data provided directly from OrthoDB:Pura. Refer to their site for version information.

Paralogs

Downloads

Download All DIOPT Paralogs

Paralogs (via DIOPT v9.1)

Gene Symbol

Score

Source

Alignment

Drosophila melanogaster (Fruit fly) (14)

4 of 13

4 of 13

3 of 13

3 of 13

2 of 13

2 of 13

2 of 13

sif

2 of 13

Vav

2 of 13

CG43102

1 of 13

CG43658

1 of 13

Obsc

1 of 13

pbl

1 of 13

RhoGAP1A

1 of 13

Human Disease Associations

FlyBase Human Disease Model Reports

Disease Ontology (DO) Annotations

Models Based on Experimental Evidence ( 0 )

Allele

Disease

Evidence

References

Potential Models Based on Orthology ( 0 )

Human Ortholog

Disease

Evidence

References

Modifiers Based on Experimental Evidence ( 0 )

Allele

Disease

Interaction

References

Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)

Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.

Homo sapiens (Human)

Gene name

Score

OMIM

OMIM Phenotype

DO term

Complementation?

Transgene?

PLEKHG4B; pleckstrin homology and RhoGEF domain containing G4B

10 of 14

620665

PLEKHG4; pleckstrin homology and RhoGEF domain containing G4

10 of 14

609526

ARHGEF40; Rho guanine nucleotide exchange factor 40

4 of 14

610018

Functional Complementation Data

Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.

Interactions

Summary of Physical Interactions

Interaction Browsers

View in FlyBase Interactions Browser View in MIST tool (external link)

Please see the Physical Interaction reports below for full details

RNA-protein

Physical Interaction

Assay

References

Pura - Ubx

nucleic acid uv cross-linking assay, fluorescent dye label, fluorescence technology, anti tag coimmunoprecipitation, quantitative reverse transcription pcr

(Blanco et al., 2025, Carnesecchi et al., 2022)

Summary of Genetic Interactions

Interaction Browsers

View in FlyBase Interactions Browser View in MIST tool (external link)

Please look at the allele data for full details of the genetic interactions

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

Rho1

suppressible

Pura

(Petsakou et al., 2015)

External Data

Linkouts

BioGRID - A database of protein and genetic interactions.

77797

DroID - A comprehensive database of gene and protein interactions.

FBgn0035802

MIST (protein-protein) - An integrated Molecular Interaction Database

2768948

Pathways

Signaling Pathways (FlyBase)

Metabolic Pathways

FlyBase

External Links

External Data

Linkouts

Class of Gene

nuclear_gene

protein_coding_gene

Genomic Location and Detailed Mapping Data

Chromosome (arm)

Recombination map

3-21

Cytogenetic map

66A6-66A8

Sequence location

3L:7,593,091..7,639,573 [+]

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

66A6-66A8

Limits computationally determined from genome sequence between P{PZ}l(3)07217⁰⁸²²³&P{EP}Rac2^EP3118 and P{lacW}Nmt^j1C7

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

3-21

(FlyBase, 2016)

3-17.7

(Comeron et al., 2012)

Left of (cM)

Right of (cM)

Notes

Stocks and Reagents

Stocks (35)

Aberrations including deletions of this gene Aberrations including duplications of this gene

Bloomington

71316

w¹¹¹⁸; P{VT027168-p65.AD}attP40

73483

w¹¹¹⁸; P{VT027168-GAL4.DBD}attP2

73484

w¹¹¹⁸; P{VT027175-GAL4.DBD}attP2

Korea

12420

P{VT027168-GAL4}attP2

13465

P{VT027166-GAL4}attP2

13746

P{VT027175-GAL4}attP2

11620

7511R-1

7511R-2

7515R-2

v15927

w¹¹¹⁸; P{GD5862}v15927

v52654

w¹¹¹⁸; P{GD10775}v52654

More stocks available...

Genomic Clones (35)

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones (79)

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequenced

BDGP DGC clones

Other clones

FI18828

Drosophila Genomics Resource Center cDNA clones

For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

FBgn0035802

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

RNAi and Array Information

Linkouts

DRSC - Results frm RNAi screens

FBgn0035802

Antibody Information

Laboratory Generated Antibodies

Commercially Available Antibodies

Cell Line Information

Publicly Available Cell Lines

Other Stable Cell Lines

Other Comments

dsRNA made from templates generated with primers directed against this gene tested in RNAi screen for effects on Kc167 and S2R⁺ cell morphology.

(Kiger et al., 2003)

Relationship to Other Genes

Source for database merge of

Source for merge of: CG7511 CG7513

(FlyBase Genome Annotators, 2004, FlyBase Genome Annotators, 2002-2003)

Additional comments

Annotations CG7511 and CG7513 merged as CG33167 in release 3 of the genome annotation.

(FlyBase Genome Annotators, 2004, FlyBase Genome Annotators, 2002-2003)

Nomenclature History

Source for database identify of

Source for identity of: Pura CG33275

(Petsakou et al., 2015)

Nomenclature comments

Etymology

Named based on homology to the human Puratrophin-1 gene.

(Petsakou et al., 2015)

Synonyms and Secondary IDs (8)

Reported As

Symbol Synonym

CG33167

(Chung et al., 2011, Giot et al., 2003)

CG7511

(Mack et al., 2006, Stanyon et al., 2004)

CG7513

CG7515

(Kearney et al., 2004)

CG7520

Pura

(Bischoff et al., 2025, Blanco et al., 2025, Kamiyama et al., 2025, Gilbert et al., 2024, di Pietro et al., 2023, Ding et al., 2022, Pavlidaki et al., 2022, Guzman et al., 2021, King and Sehgal, 2020, Meltzer et al., 2019, Nakamura et al., 2017, Clandinin and Owens, 2016-, Petsakou et al., 2015)

Name Synonyms

Puratrophin-1-like

Secondary FlyBase IDs

FBgn0035801
FBgn0035803
FBgn0035804
FBgn0053167
FBgn0053275

Datasets (0)

Study focus (0)

Experimental Role

Project

Project Type

Title

Study result (0)

Result

Result Type

Title

External Crossreferences and Linkouts ( 66 )

Sequence Crossreferences

NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

2768948

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.

RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

UniProt/GCRP - The gene-centric reference proteome (GCRP) provides a 1:1 mapping between genes and UniProt accessions in which a single 'canonical' isoform represents the product(s) of each protein-coding gene.

Q7KU89

UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information

Other crossreferences

AlphaFold DB - AlphaFold provides open access to protein structure predictions for the human proteome and other key proteins of interest, to accelerate scientific research.

Q7KU89

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0035802

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

2768948/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0035802

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0035802

FlyMine - An integrated database for Drosophila genomics

FBgn0035802

InterPro - A database of protein families, domains and functional sites

KEGG Genes - Molecular building blocks of life in the genomic space.

dme:Dmel_CG33275

MARRVEL_MODEL - MARRVEL (model organism gene)

2768948

Linkouts

BioGRID - A database of protein and genetic interactions.

77797

Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones

FBgn0035802

DroID - A comprehensive database of gene and protein interactions.

FBgn0035802

DRSC - Results frm RNAi screens

FBgn0035802

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0035802

FlyCyc Genes - Genes from a BioCyc PGDB for Dmel

FBGN0035802

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

Flygut - An atlas of the Drosophila adult midgut

FBgn0035802

FlyMet - A comprehensive tissue-specific metabolomics resource for Drosophila.

FBgn0035802

iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)

MIST (protein-protein) - An integrated Molecular Interaction Database

2768948

References (79)

The following external sites may use different assemblies or annotations than FlyBase.

0.06

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