FlyBase Gene Report: Dmel\mir-1

(Trébuchet et al., 2019, Kuzuoğlu-Öztürk et al., 2016, King et al., 2011, Eulalio et al., 2009, Eulalio et al., 2008, Easow et al., 2007, Kwon et al., 2005, Robins et al., 2005)

inferred from direct assay

(Zhu et al., 2017)

Terms Based on Predictions or Assertions (0 terms)

Biological Process (9 terms)

Terms Based on Experimental Evidence (9 terms)

CV Term

Evidence

References

involved_in establishment or maintenance of cell polarity

inferred from mutant phenotype

(King et al., 2011)

involved_in imaginal disc-derived wing vein morphogenesis

inferred from direct assay

(Zhu et al., 2017)

involved_in miRNA-mediated gene silencing by mRNA destabilization

inferred from direct assay

(King et al., 2011, Eulalio et al., 2009, Eulalio et al., 2008)

involved_in miRNA-mediated post-transcriptional gene silencing

inferred from direct assay

(Trébuchet et al., 2019, Kuzuoğlu-Öztürk et al., 2016, Easow et al., 2007, Kwon et al., 2005, Robins et al., 2005)

inferred from direct assay

(Zhu et al., 2017)

involved_in negative regulation of cardiac myofibril assembly

inferred from direct assay

(Zhu et al., 2017)

involved_in negative regulation of Notch signaling pathway

inferred from mutant phenotype

(Kwon et al., 2005)

involved_in positive regulation of cardiac muscle cell differentiation

inferred from mutant phenotype

(Kwon et al., 2005)

involved_in positive regulation of cardiocyte differentiation

inferred from mutant phenotype

(Kwon et al., 2005)

involved_in positive regulation of Notch signaling pathway

inferred from mutant phenotype

(Zhu et al., 2017)

Terms Based on Predictions or Assertions (1 term)

CV Term

Evidence

References

involved_in miRNA-mediated post-transcriptional gene silencing

inferred from electronic annotation with Rfam:RF00103

(RNAcentral, 2018-)

Cellular Component (1 term)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (1 term)

CV Term

Evidence

References

part_of RISC complex

inferred from electronic annotation with Rfam:RF00103

(RNAcentral, 2018-)

Gene Group (FlyBase)

Pathway (FlyBase)

NEGATIVE REGULATORS OF NOTCH SIGNALING PATHWAY

POSITIVE REGULATORS OF NOTCH SIGNALING PATHWAY

Protein Family (UniProt)

Protein Signatures (InterPro)

Summaries

Pathway (FlyBase)

NEGATIVE REGULATORS OF NOTCH SIGNALING PATHWAY -: The Notch receptor signaling pathway is activated by the binding of the transmembrane receptor Notch (N) to transmembrane ligands, Dl or Ser, presented on adjacent cells. This results in the proteolytic cleavage of N, releasing the intracellular domain (NICD). NICD translocates into the nucleus, interacting with Su(H) and mam to form a transcription complex, which up-regulates transcription of Notch-responsive genes. Negative regulators of the pathway down-regulate the signal from the sending cell or the response in the receiving cell. (Adapted from FBrf0225731 and FBrf0192604).
POSITIVE REGULATORS OF NOTCH SIGNALING PATHWAY -: The Notch receptor signaling pathway is activated by the binding of the transmembrane receptor Notch (N) to transmembrane ligands, Dl or Ser, presented on adjacent cells. This results in the proteolytic cleavage of N, releasing the intracellular domain (NICD). NICD translocates into the nucleus, interacting with Su(H) and mam to form a transcription complex, which up-regulates transcription of Notch-responsive genes. Positive regulators of the pathway enhance the signal from the sending cell or the response in the receiving cell. (Adapted from FBrf0225731 and FBrf0192604).

Gene Model and Products

Number of Transcripts

Number of Unique Polypeptides

Please see the JBrowse view of Dmel\mir-1 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)

Isoform displayed:

Pfam protein domains

InterPro name

classification

start

end

Protein Domains (via SMART)

Isoform displayed:

SMART protein domains

InterPro name

classification

start

end

Structure

Experimentally Determined Structures

Crossreferences

Comments on Gene Model

Locations and structures of miRNA models as mapped by miRBase (FBrf0220601).

Conserved: found throughout the Drosophila genus (FBrf0230987).

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

FBtr0304488

FBtr0472701

FBtr0304487

Additional Transcript Data and Comments

Reported size (kB)

Comments

External Data

Crossreferences

miRBase - A searchable database of published miRNA sequences and annotation.

MI0000116

Sequences Consistent with the Gene Model

Nucleotide / Polypeptide Records

AJ421756

Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\mir-1 using the Feature Mapper tool.

External Data

Crossreferences

Linkouts

Expression Data

Testis-specificity index

The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

NA

Transcript Expression

in situ

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage 5

organism | ventral

(Aboobaker et al., 2005)

mesoderm anlage

(Sokol and Ambros, 2005)

embryonic stage 5 -- 11

mesoderm

(Biemar et al., 2005)

embryonic stage 6

organism | ventral

Comment: gap at site of presumptive anterior endoderm

(Aboobaker et al., 2005)

mesoderm

(Sokol and Ambros, 2005)

embryonic stage 8 -- 11

mesoderm

(Aboobaker et al., 2005)

embryonic stage 11

head mesoderm

(Sokol and Ambros, 2005)

visceral trunk mesoderm

(Sokol and Ambros, 2005)

somatic trunk mesoderm

(Sokol and Ambros, 2005)

embryonic stage 12 -- 13

somatic muscle primordium

(Aboobaker et al., 2005)

pharyngeal muscle cell

(Aboobaker et al., 2005)

trunk visceral muscle primordium

(Aboobaker et al., 2005)

cardiogenic mesoderm

(Aboobaker et al., 2005)

embryonic stage 13

embryonic somatic muscle | punctate

(Sokol and Ambros, 2005)

pharyngeal muscle

(Sokol and Ambros, 2005)

embryonic visceral muscle cell

(Sokol and Ambros, 2005)

embryonic stage 15

somatic trunk mesoderm

(Sokol and Ambros, 2005)

heart primordium

(Sokol and Ambros, 2005)

embryonic dorsal vessel

(Sokol and Ambros, 2005)

northern blot

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage -- adult stage

(Aravin et al., 2003, Sempere et al., 2003)

Additional Descriptive Data

mir-1 transcript is expressed in embryonic mesoderm and mesoderm-derived tissues.

(Biemar et al., 2005)

Expression increases with time to a peak in the first larval instar, then decreases. Expression levels in male and female adults are comparable to that in first instar larvae.

(Aravin et al., 2003)

Northern analysis of 24 microRNAs showed that a number of them were expressed constituitively throughout development.

(Sempere et al., 2003)

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Evidence

References

Expression Deduced from Reporters

Reporter: P{mir-1.eve-lacZ}

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage 8 -- 11

mesoderm

(Biemar et al., 2005)

High-Throughput Expression Data

Associated Tools

JBrowse - Visual display of RNA-Seq signals

View Dmel\mir-1 in JBrowse

RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region

View exonic expression by developmental stage for Dmel\mir-1

View exonic expression by tissue for Dmel\mir-1

Bulk Downloads

RNA-Seq RPKM values for all genes

Reference

See Gelbart and Emmert, 2013 for analysis details and data files for all genes.

Developmental Proteome: Life Cycle

Developmental Proteome: Embryogenesis

External Data and Images

Linkouts

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

12798026/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0262455

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0262455

Images

FlyBase Wiki

Image Based Resources

Alleles, Insertions, Transgenic Constructs, and Aberrations

Classical and Insertion Alleles ( 2 )

For All Classical and Insertion Alleles Show

Other relevant insertions

Transgenic Constructs ( 12 )

For All Alleles Carried on Transgenic Constructs Show

Transgenic constructs containing/affecting coding region of mir-1

Transgenic constructs containing regulatory region of mir-1

Aberrations (Deficiencies and Duplications) ( 0 )

Inferred from experimentation ( 0 )

Inferred from location ( 4 )

Variants

Variant Molecular Consequences

Alleles Representing Disease-Implicated Variants

Phenotypes

For more details about a specific phenotype click on the relevant allele symbol.

Lethality

Allele

lethal, with Scer\GAL4^Act5C.PU

mir-1^UAS.cSa

lethal, with Scer\GAL4^Bx-MS1096

mir-1^UAS.cSa

lethal, with Scer\GAL4^ey.PU

mir-1^UAS.cSa

lethal, with Scer\GAL4^ptc-559.1

mir-1^{UAS.DsRed(Unk)}

lethal (with Df(2L)ED1315)

mir-1^KO

lethal | embryonic stage

mir-1^Δ31kb

lethal | larval stage

mir-1^Δ31kb

lethal | pharate adult stage, with Scer\GAL4^Bx-MS1096

lethal | pupal stage, with Scer\GAL4^Bx-MS1096

lethal | recessive

mir-1^KO

lethal - all die before end of pupal stage, with Scer\GAL4^sd-SG29.1

lethal - all die before end of second instar larval stage | recessive

mir-1^KO

lethal - all die during embryonic stage, with Scer\GAL4^da.G32

mir-1^UAS.cKa

lethal - all die during embryonic stage, with Scer\GAL4^how-24B

mir-1^UAS.cKa

lethal - all die during embryonic stage, with Scer\GAL4^ptc-559.1

mir-1^UAS.pLUC

viable, with Scer\GAL4^Tub.PU

mir-1^sponge.UAS

Other Phenotypes

Allele

decreased occurrence of cell division | adult stage | conditional, with Scer\GAL4^NP6267

mir-1^UAS.pLUC

decreased rate of movement | larval stage | recessive

mir-1^KO

flightless | progressive, with Scer\GAL4^Mef2.PU

mir-1^sponge.UAS

increased occurrence of cell division | adult stage | conditional, with Scer\GAL4^NP6267

mir-1^sponge.UAS

some die during embryonic stage, with Scer\GAL4^da.G32

mir-1^UAS.cKa

some die during embryonic stage, with Scer\GAL4^how-24B

mir-1^UAS.cKa

some die during embryonic stage, with Scer\GAL4^ptc-559.1

mir-1^UAS.pLUC

some die during embryonic stage (with Df(2L)ED1315)

mir-1^KO

some die during embryonic stage | recessive

mir-1^KO

some die during larval stage (with Df(2L)ED1315)

mir-1^KO

some die during larval stage | recessive

mir-1^KO

some die during pupal stage, with Scer\GAL4^sd-SG29.1

some die during second instar larval stage | recessive

mir-1^KO

Phenotype manifest in

Allele

adult heart, with Scer\GAL4^tin.CΔ4

mir-1^UAS.cKa

adult midgut | conditional, with Scer\GAL4^NP6267

dorsal vessel wall cell

mir-1^Δ31kb

dorsal vessel wall cell, with Scer\GAL4^da.G32

mir-1^UAS.cKa

dorsal vessel wall cell, with Scer\GAL4^how-24B

mir-1^UAS.cKa

germline cell | embryonic stage

mir-1^KO

indirect flight muscle cell, with Scer\GAL4^Mef2.PU

mir-1^sponge.UAS

larval somatic muscle cell

mir-1^Δ31kb

larval somatic muscle cell, with Scer\GAL4^da.G32

mir-1^UAS.cKa

larval somatic muscle cell, with Scer\GAL4^how-24B

mir-1^UAS.cKa

larval somatic muscle cell | second instar larval stage

mir-1^KO

muscle cell of abdominal 7 dorsal acute muscle 1

mir-1^Δ31kb

muscle cell of mesothoracic dorsal acute muscle 1

mir-1^Δ31kb

muscle cell of metathoracic dorsal acute muscle 1

mir-1^Δ31kb

visceral muscle of larval heart & embryonic/larval pericardial cell

mir-1^Δ31kb

wing, with Scer\GAL4^Bx-MS1096

mir-1^UAS.pLUC

Orthologs

Downloads

Download All DIOPT Orthologs

Human Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Homo sapiens (Human) (3)

Hsap\MIR1-1

1 of 14

Yes

Hsap\MIR1-2

1 of 14

Yes

Hsap\MIR206

1 of 14

Yes

Model Organism Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Rattus norvegicus (Norway rat) (3)

Rnor\Mir1b

1 of 14

Yes

Rnor\Mir206

1 of 14

Yes

Rnor\Mir3571

1 of 14

Yes

Mus musculus (laboratory mouse) (3)

Mmus\Mir1a-1

1 of 14

Yes

Mmus\Mir1a-2

1 of 14

Yes

Mmus\Mir206

1 of 14

Yes

Xenopus tropicalis (Western clawed frog) (0)

Danio rerio (Zebrafish) (4)

Drer\mir1-1

1 of 14

Yes

Drer\mir1-2

1 of 14

Yes

Drer\mir206-1

1 of 14

Yes

Drer\mir206-2

1 of 14

Yes

Caenorhabditis elegans (Nematode, roundworm) (1)

Cele\mir-1

1 of 14

Yes

Anopheles gambiae (African malaria mosquito) (0)

Arabidopsis thaliana (thale-cress) (0)

Saccharomyces cerevisiae (Brewer's yeast) (0)

Schizosaccharomyces pombe (Fission yeast) (0)

Escherichia coli (enterobacterium) (0)

Other Organism Orthologs (via OrthoDB)

Data provided directly from OrthoDB:mir-1. Refer to their site for version information.

Paralogs

Downloads

Download All DIOPT Paralogs

Paralogs (via DIOPT v9.1)

Gene Symbol

Score

Source

Alignment

Drosophila melanogaster (Fruit fly) (0)

Human Disease Associations

FlyBase Human Disease Model Reports

Disease Ontology (DO) Annotations

Models Based on Experimental Evidence ( 1 )

Allele

Disease

Evidence

References

mir-1^sponge.UAS

model of dilated cardiomyopathy

CEA

(Souidi et al., 2023)

Potential Models Based on Orthology ( 0 )

Human Ortholog

Disease

Evidence

References

Modifiers Based on Experimental Evidence ( 0 )

Allele

Disease

Interaction

References

Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)

Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.

Homo sapiens (Human)

Gene name

Score

OMIM

OMIM Phenotype

DO term

Complementation?

Transgene?

Functional Complementation Data

Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.

Interactions

Summary of Physical Interactions

Interaction Browsers

View in FlyBase Interactions Browser View in MIST tool (external link)

Please see the Physical Interaction reports below for full details

RNA-protein

Physical Interaction

Assay

References

mir-1 - AGO1

anti bait coimmunoprecipitation, northern blot

(Saito et al., 2006)

mir-1 - Fmr1

anti bait coimmunoprecipitation, quantitative reverse transcription pcr

(Yang et al., 2009)

mir-1 - His1

anti tag coimmunoprecipitation, quantitative reverse transcription pcr

(Liu et al., 2016)

mir-1 - ref(2)P

anti tag coimmunoprecipitation, quantitative reverse transcription pcr

(Ghosh et al., 2024)

RNA-RNA

Physical Interaction

Assay

References

mir-1 - Als2

luminiscence technology

(Easow et al., 2007)

mir-1 - CG17065

luminiscence technology

(Easow et al., 2007)

mir-1 - CG18542

luminiscence technology

(Easow et al., 2007)

mir-1 - CG31121

luminiscence technology

(Easow et al., 2007)

mir-1 - Chd64

luminiscence technology

(Easow et al., 2007)

mir-1 - Creld

luminiscence technology

(Easow et al., 2007)

mir-1 - Delta

luminiscence technology, immunohistochemistry

(Kwon et al., 2005)

mir-1 - Hrb98DE

luminiscence technology

(King et al., 2011)

mir-1 - Msr-110

luminiscence technology

(Easow et al., 2007)

mir-1 - Nedd4

luminiscence technology, western blot, necessary binding region

(Zhu et al., 2017, Easow et al., 2007)

mir-1 - Prx4

luminiscence technology

(Easow et al., 2007)

mir-1 - Pu

luminiscence technology

(Eulalio et al., 2009)

mir-1 - crim

luminiscence technology

(Easow et al., 2007)

mir-1 - kay

luminiscence technology, necessary binding region

(King et al., 2011)

mir-1 - par-6

luminiscence technology

(Kuzuoğlu-Öztürk et al., 2016, Eulalio et al., 2009, Eulalio et al., 2008)

mir-1 - pk

luminiscence technology

(King et al., 2011)

mir-1 - repo

luminiscence technology

(Trébuchet et al., 2019)

mir-1 - sinu

luminiscence technology

(Easow et al., 2007)

mir-1 - tutl

luminiscence technology

(Robins et al., 2005)

Summary of Genetic Interactions

Interaction Browsers

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

External Data

Linkouts

DroID - A comprehensive database of gene and protein interactions.

FBgn0262455

Pathways

Signaling Pathways (FlyBase)

NEGATIVE REGULATORS OF NOTCH SIGNALING PATHWAY
POSITIVE REGULATORS OF NOTCH SIGNALING PATHWAY

Metabolic Pathways

FlyBase

External Links

External Data

Linkouts

Class of Gene

miRNA_gene

(FlyBase Genome Annotators, 2010, Lagos-Quintana et al., 2001)

nuclear_gene

(FlyBase Genome Annotators, 2010, Lagos-Quintana et al., 2001)

Genomic Location and Detailed Mapping Data

Chromosome (arm)

Recombination map

2-54

Cytogenetic map

38C8-38C8

Sequence location

2L:20,487,441..20,487,531 [+]

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

38C8-38C8

Limits computationally determined from genome sequence between P{EP}CG16798^EP401&P{lacW}k07219 and P{lacW}k02501&P{lacW}k14810

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

2-54

(FlyBase, 2016)

2-54.0

(Comeron et al., 2012)

Left of (cM)

Right of (cM)

Notes

Stocks and Reagents

Stocks (3)

Aberrations including deletions of this gene Aberrations including duplications of this gene

Bloomington

41125

w¹¹¹⁸; P{UAS-LUC-mir-1.T}attP2/TM3, Sb¹

58879

w^*; mir-1^KO/CyO, P{GAL4-twi.G}2.2, P{UAS-2xEGFP}AH2.2

FlyORF

F001976

M{UAS-mir-1.S}ZH-86Fb

Genomic Clones (23)

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones (0)

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequenced

BDGP DGC clones

Other clones

Drosophila Genomics Resource Center cDNA clones

For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi and Array Information

Linkouts

Antibody Information

Laboratory Generated Antibodies

Commercially Available Antibodies

Cell Line Information

Publicly Available Cell Lines

Other Stable Cell Lines

New stable cell line derived from S2-unspecified : S2 cell lines were created that express EGFP mRNA containing target sites in the 3' UTR for either mir-1, mir-34, mir-let7, or mir-ban.
(Ameres et al., 2010)

Other Comments

Tiling experiments indicate that the mir-1 gene is 2.9kb in length. mir-1 is directly activated by dl amd twi.

(Biemar et al., 2005)

mir-1 is not required for the formation or physiological function of the larval musculature, but is required for the dramatic post-mitotic growth of larval muscle.

(Sokol and Ambros, 2005)

New annotation (CR32958) in release 3 of the genome annotation.

(FlyBase Genome Annotators, 2002-2003)

Relationship to Other Genes

Source for database merge of

Additional comments

The annotation for mir-1 has been changed in release 5.31 of the genome annotation, so that instead of representing a mature miRNA it now represents the precursor stem loop pre-miRNA. The symbol of the annotation has been changed from CR32958 to CR43027 to reflect this change.

(FlyBase Genome Annotators, 2010)

Nomenclature History

Source for database identify of

Nomenclature comments

Etymology

Synonyms and Secondary IDs (19)

Reported As

Symbol Synonym

CR32958

CR43027

(FlyBase Genome Annotators, 2010)

DmiR-1

(Taylor, 2006, Sokol and Ambros, 2005)

MIR-1

(Ylla et al., 2016)

MiR-1

(Yang et al., 2009)

Mir-1

(Robins et al., 2005)

Mir1

(Olson, 2006)

dme-miR-1

(Alberti et al., 2018, Volin et al., 2018, Chandra et al., 2017, Towler et al., 2015)

dme-miR-1-3p

(Chandra et al., 2015)

dme-mir-1

(He et al., 2022, Chen et al., 2013, miRBase, 2013, Reinhardt et al., 2012, Berezikov et al., 2011, Huang and Gu, 2007)

dmiR-1

(Souidi et al., 2023, King et al., 2011, Kwon et al., 2005)

miR-1

(Narbonne-Reveau et al., 2025, Varghese et al., 2025, Atienzar-Aroca et al., 2024, Ghosh et al., 2024, Li et al., 2024, Chan et al., 2023, Gallicchio et al., 2022, Kvon et al., 2021, Layalle et al., 2021, Souidi and Jagla, 2021, Donelson et al., 2020, Dubey et al., 2020, Rastegari et al., 2020, Soleimani et al., 2020, Xia et al., 2020, Liu et al., 2019, Zhu et al., 2019, Avital et al., 2018, Cosacak et al., 2018, Daniel et al., 2018, Cannon et al., 2017, Chandra et al., 2017, Picao-Osorio et al., 2017, Zhu et al., 2017, Funikov et al., 2016, Liu et al., 2016, Fulga et al., 2015, Suh et al., 2015, Fu et al., 2014, Kong et al., 2014, Kozomara et al., 2014, Xia and Zhang, 2014, Esslinger et al., 2013, Laneve et al., 2013, Li et al., 2013, Lucas and Raikhel, 2013, Mezan et al., 2013, Nesler et al., 2013, Nishihara et al., 2013, Fukunaga et al., 2012, Liu et al., 2012, Tan et al., 2012, Xu et al., 2012, Liu et al., 2011, Ni et al., 2011, Qian et al., 2011, Ameres et al., 2010, Czech et al., 2009, Eulalio et al., 2009, Hong et al., 2009, Kadener et al., 2009, Nahvi et al., 2009, Yu et al., 2009, Zekri et al., 2009, Eulalio et al., 2008, Ibáñez-Ventoso et al., 2008, Behura, 2007, Easow et al., 2007, Okamura et al., 2007, Zeitlinger et al., 2007, Biemar et al., 2006, Biemar et al., 2006, Carthew, 2006, Nguyen and Frasch, 2006, Saito et al., 2006, Taylor, 2006, Brennecke et al., 2005, Kwon et al., 2005, Leaman, 2005, Sokol and Ambros, 2005, Stark et al., 2005, Allawi et al., 2004, Nakahara and Carthew, 2004, Boutla et al., 2003, Lai et al., 2003, Sempere et al., 2003, Stark et al., 2003, Stark et al., 2003, Grosshans and Slack, 2002, Moss, 2002, Lagos-Quintana et al., 2001, Lau et al., 2001, Lee et al., 2001)

miR-1-3p

(Gartland et al., 2022, Hotzy et al., 2022)

miR1

(Berdnik et al., 2008)

mirR-1

(Haley et al., 2008)

transfrag 8

(Biemar et al., 2006)

Name Synonyms

miR-1

(Westholm et al., 2014, Easow et al., 2007)

microRNA 1

(Zhu et al., 2017)

mir-1

mir-1 stem loop

Secondary FlyBase IDs

FBgn0046834
FBgn0262320

Datasets (0)

Study focus (0)

Experimental Role

Project

Project Type

Title

Study result (0)

Result

Result Type

Title

External Crossreferences and Linkouts ( 15 )

Sequence Crossreferences

NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

12798026

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

AJ421756

RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

RNAcentral - A comprehensive ncRNA sequence collection representing all ncRNA types from a broad range of organisms

Other crossreferences

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

12798026/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0262455

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0262455

KEGG Genes - Molecular building blocks of life in the genomic space.

dme:Dmel_CR43027

MARRVEL_MODEL - MARRVEL (model organism gene)

12798026

miRBase - A searchable database of published miRNA sequences and annotation.

MI0000116

Linkouts

DroID - A comprehensive database of gene and protein interactions.

FBgn0262455

FlyCyc Genes - Genes from a BioCyc PGDB for Dmel

FBGN0262455

References (149)

The following external sites may use different assemblies or annotations than FlyBase.

NA

Report Sections